Pre_GI: BLASTN Hits

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Query: NC_010634:1342393 Yersinia pseudotuberculosis PB1/+, complete genome

Start: 1342393, End: 1367330, Length: 24938

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010159:14179931417993144109923107Yersinia pestis Angola, complete genome019940BLASTN svgBLASTP svg
NC_008150:65089965089967359922701Yersinia pestis Antiqua, complete genome019940BLASTN svgBLASTP svg
NC_003143:12331281233128125981426687Yersinia pestis CO92, complete genome019940BLASTN svgBLASTP svg
NC_005810:11302511130251115417023920Yersinia pestis biovar Microtus str. 91001, complete genome013710BLASTN svgBLASTP svg
NC_008149:3251196*3251196327595124756Yersinia pestis Nepal516, complete genome013700BLASTN svgBLASTP svg
NC_004088:3382148*3382148340611023963Yersinia pestis KIM, complete genome013700BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,03106BLASTN svgBLASTP svg
NC_003143:67562267562269837822757Yersinia pestis CO92, complete genome02206BLASTN svgBLASTP svg
NC_008149:33732293373229340909935871Yersinia pestis Nepal516, complete genome02204BLASTN svgBLASTP svg
NC_004088:35053833505383354055935177Yersinia pestis KIM, complete genome02204BLASTN svgBLASTP svg
NC_003143:87536787536791053535169Yersinia pestis CO92, complete genome02204BLASTN svgBLASTP svg
NC_005815:611486114811099949852Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete02202BLASTN svgBLASTP svg
NC_003143:1973867*1973867199917525309Yersinia pestis CO92, complete genome02200BLASTN svgBLASTP svg
NC_008118:567775677710299946223Yersinia pestis Nepal516 plasmid pMT, complete sequence02200BLASTN svgBLASTP svg
NC_008120:62000620008949927500Yersinia pestis Antiqua plasmid pMT, complete sequence02198BLASTN svgBLASTP svg
NC_005810:43067164306716433058723872Yersinia pestis biovar Microtus str. 91001, complete genome02198BLASTN svgBLASTP svg
NC_005810:14677721467772150509937328Yersinia pestis biovar Microtus str. 91001, complete genome02198BLASTN svgBLASTP svg
NC_004838:510135101310003049018Yersinia pestis KIM plasmid pMT-1, complete sequence02198BLASTN svgBLASTP svg
NC_004088:4202247*4202247422568123435Yersinia pestis KIM, complete genome02198BLASTN svgBLASTP svg
NC_004088:2640440*2640440268328342844Yersinia pestis KIM, complete genome02198BLASTN svgBLASTP svg
NC_004088:2366000*2366000239081024811Yersinia pestis KIM, complete genome02198BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome02198BLASTN svgBLASTP svg
NC_003143:39874839874842431625569Yersinia pestis CO92, complete genome02198BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome02198BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome02198BLASTN svgBLASTP svg
NC_008149:2652825*2652825267618023356Yersinia pestis Nepal516, complete genome02198BLASTN svgBLASTP svg
NC_008149:31886031886034352424665Yersinia pestis Nepal516, complete genome02198BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome02198BLASTN svgBLASTP svg
NC_010159:10719371071937109241320477Yersinia pestis Angola, complete genome02198BLASTN svgBLASTP svg
NC_010158:1*11809918099Yersinia pestis Angola plasmid pMT-pPCP, complete sequence02198BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008150:4601202*4601202462030019099Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008150:43737224373722439711823397Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008150:37119533711953374731835366Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008150:34958513495851351954723697Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome02198BLASTN svgBLASTP svg
NC_008149:36481393648139368280234664Yersinia pestis Nepal516, complete genome02198BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome02190BLASTN svgBLASTP svg
NC_010159:31206423120642314771827077Yersinia pestis Angola, complete genome02190BLASTN svgBLASTP svg
NC_010159:34484903448490348540936920Yersinia pestis Angola, complete genome02190BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome02163BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome02159BLASTN svgBLASTP svg
NC_011750:15650001565000158659921600Escherichia coli IAI39 chromosome, complete genome02153BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome02151BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence02145BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome02046BLASTN svgBLASTP svg
NC_008150:27858302785830280809922270Yersinia pestis Antiqua, complete genome02028BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome02014BLASTN svgBLASTP svg
NC_010159:1668795*1668795168827719483Yersinia pestis Angola, complete genome02006BLASTN svgBLASTP svg
NC_010159:12086991208699123266623968Yersinia pestis Angola, complete genome01968BLASTN svgBLASTP svg
NC_020064:3609844*3609844365321743374Serratia marcescens FGI94, complete genome01705BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome01566BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome01566BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome01558BLASTN svgBLASTP svg
NC_008253:28285732828573285250723935Escherichia coli 536, complete genome01507BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome01481BLASTN svgBLASTP svg
NC_010660:864458644510942022976Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence01263BLASTN svgBLASTP svg
NC_014500:84249384249388059638104Dickeya dadantii 3937 chromosome, complete genome01144BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome01136BLASTN svgBLASTP svg
NC_020181:51305135130513517631045798Enterobacter aerogenes EA1509E, complete genome01122BLASTN svgBLASTP svg
NC_013508:2587913*2587913262259934687Edwardsiella tarda EIB202, complete genome0942BLASTN svgBLASTP svg
NC_013508:1289159*1289159133392244764Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:1491945*1491945152068628742Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:16874321687432172109933668Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:26348*263485519528848Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:31889783188978324937660399Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:35930003593000361400721008Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome0940BLASTN svgBLASTP svg
NC_013961:441719*44171947879337075Erwinia amylovora, complete genome0848BLASTN svgBLASTP svg
NC_010158:928199281911499922181Yersinia pestis Angola plasmid pMT-pPCP, complete sequence0844BLASTN svgBLASTP svg
NC_006511:20900582090058211818728130Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC0708BLASTN svgBLASTP svg
NC_011083:82465982465985295528297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,0692BLASTN svgBLASTP svg
NC_011080:78085078085080915728308Salmonella enterica subsp. enterica serovar Newport str. SL254,0692BLASTN svgBLASTP svg
NC_003197:77623877623880454628309Salmonella typhimurium LT2, complete genome0692BLASTN svgBLASTP svg
NC_010102:23228662322866235445731592Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,0668BLASTN svgBLASTP svg
NC_003198:75177975177977932827550Salmonella enterica subsp. enterica serovar Typhi str. CT18,0660BLASTN svgBLASTP svg
NC_004631:22058212205821223319827378Salmonella enterica subsp. enterica serovar Typhi Ty2, complete0660BLASTN svgBLASTP svg
NC_012917:83372183372187179538075Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-177630BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome9e-167595BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome1e-128468BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome1e-128468BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome3e-126460BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome3e-126460BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome3e-126460BLASTN svgBLASTP svg
NC_015061:37259213725921375022024300Rahnella sp. Y9602 chromosome, complete genome8e-121442BLASTN svgBLASTP svg
NC_015663:1356982*1356982138951032529Enterobacter aerogenes KCTC 2190 chromosome, complete genome5e-116426BLASTN svgBLASTP svg
NC_012779:29570002957000298403927040Edwardsiella ictaluri 93-146, complete genome1e-101379BLASTN svgBLASTP svg
NC_012779:2755338*2755338278000524668Edwardsiella ictaluri 93-146, complete genome9e-99369BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome1e-97365BLASTN svgBLASTP svg
NC_009778:56700056700060530938310Enterobacter sakazakii ATCC BAA-894, complete genome1e-97365BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome6e-94353BLASTN svgBLASTP svg
NC_007946:28947932894793291753922747Escherichia coli UTI89, complete genome6e-94353BLASTN svgBLASTP svg
NC_008563:29099452909945293044120497Escherichia coli APEC O1, complete genome6e-94353BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome6e-94353BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome6e-94353BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome6e-94353BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-93351BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome2e-93351BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome2e-93351BLASTN svgBLASTP svg
NC_011740:448000*44800047065722658Escherichia fergusonii ATCC 35469, complete genome2e-93351BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome9e-93349BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome3e-92347BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome5e-91343BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome5e-91343BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome2e-90341BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str5e-85323BLASTN svgBLASTP svg
NC_020063:1051310*1051310108258031271Enterobacteriaceae bacterium strain FGI 57, complete genome1e-82315BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,5e-82313BLASTN svgBLASTP svg
NC_009648:32244953224495325660032106Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome3e-80307BLASTN svgBLASTP svg
NC_014121:37769023776902380024423343Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-80307BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome3e-80307BLASTN svgBLASTP svg
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome1e-76295BLASTN svgBLASTP svg
NC_013508:2870954*2870954288859917646Edwardsiella tarda EIB202, complete genome2e-75291BLASTN svgBLASTP svg
CP002516:44744*447447499130248Escherichia coli KO11, complete genome7e-75289BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome7e-75289BLASTN svgBLASTP svg
NC_010067:191190*19119023335342164Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-74287BLASTN svgBLASTP svg
NC_014121:40431984043198407122728030Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete4e-73283BLASTN svgBLASTP svg
NC_012214:1117325*1117325114343626112Erwinia pyrifoliae Ep1/96, complete genome6e-66260BLASTN svgBLASTP svg
NC_015663:113797137971Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-65258BLASTN svgBLASTP svg
NC_012912:37491563749156377027021115Dickeya zeae Ech1591, complete genome4e-61244BLASTN svgBLASTP svg
NC_007712:30670003067000310368136682Sodalis glossinidius str. 'morsitans', complete genome9e-59236BLASTN svgBLASTP svg
NC_013592:32630053263005329243329429Dickeya dadantii Ech586, complete genome2e-47198BLASTN svgBLASTP svg
NC_013592:446092*44609246819222101Dickeya dadantii Ech586, complete genome2e-44188BLASTN svgBLASTP svg
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome7e-44186BLASTN svgBLASTP svg
CP002516:42366804236680425575819079Escherichia coli KO11, complete genome4e-36161BLASTN svgBLASTP svg
NC_012691:24762232476223251032334101Tolumonas auensis DSM 9187, complete genome1e-33153BLASTN svgBLASTP svg
NC_021066:53421275342127536560823482Raoultella ornithinolytica B6, complete genome4e-30141BLASTN svgBLASTP svg
NC_015663:54942554942558284933425Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-29139BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome1e-27133BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-27133BLASTN svgBLASTP svg
NC_009092:18748881874888191420239315Shewanella loihica PV-4, complete genome2e-26129BLASTN svgBLASTP svg
NC_004459:349500*34950040074451245Vibrio vulnificus CMCP6 chromosome I, complete sequence9e-22113BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome4e-21111BLASTN svgBLASTP svg
NC_013456:2984491*2984491300234717857Vibrio sp. Ex25 chromosome 1, complete genome1e-20109BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence2e-19105BLASTN svgBLASTP svg
NC_015740:18453701845370186638521016Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete9e-19103BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome3e-18101BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_010102:28621782862178288012617949Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-1693.7BLASTN svgBLASTP svg
NC_009832:19464011946401197178325383Serratia proteamaculans 568, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome5e-1487.7BLASTN svgBLASTP svg
AP010958:52728635272863529459921737Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011750:43900004390000444275952760Escherichia coli IAI39 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008563:47078264707826473072322898Escherichia coli APEC O1, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_004431:1211000*1211000123322222223Escherichia coli CFT073, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004431:43191524319152434223723086Escherichia coli CFT073, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008253:31613113161311320913747827Escherichia coli 536, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-1179.8BLASTN svgBLASTP svg
NC_010336:996661*996661105214055480Francisella philomiragia subsp. philomiragia ATCC 25017, complete2e-1075.8BLASTN svgBLASTP svg
NC_011750:47757704775770480021124442Escherichia coli IAI39 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007005:49927304992730502132828599Pseudomonas syringae pv. syringae B728a, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008027:77589677589680259926704Pseudomonas entomophila L48, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010501:73436373436376909934737Pseudomonas putida W619, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015276:56570156570158820522505Marinomonas mediterranea MMB-1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007963:1370903*1370903139119320291Chromohalobacter salexigens DSM 3043, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004129:92647992647994509918621Pseudomonas fluorescens Pf-5, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008781:2925818*2925818294540419587Polaromonas naphthalenivorans CJ2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009882:167350*16735019001522666Rickettsia rickettsii str. 'Sheila Smith', complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010263:167450*16745019010822659Rickettsia rickettsii str. Iowa, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014500:89413689413693546441329Dickeya dadantii 3937 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013716:50202045020204504905228849Citrobacter rodentium ICC168, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002516:89100089100091357122572Pseudomonas aeruginosa PAO1, complete genome7e-0763.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_008228:20686412068641208901520375Pseudoalteromonas atlantica T6c, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008463:47432964743296476909925804Pseudomonas aeruginosa UCBPP-PA14, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-0661.9BLASTN svgBLASTP svg
NC_011770:49241274924127497209947973Pseudomonas aeruginosa LESB58, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006511:26779642677964270110823145Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0661.9BLASTN svgBLASTP svg