Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:2068641 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20686412069198558putative hypoxanthine phosphoribosyltransferaseQuickGO ontologyBLASTP
20694322069965534YHSQuickGO ontologyBLASTP
20703302070836507protein of unknown function DUF419QuickGO ontologyBLASTP
20711002071297198CsbD-likeQuickGO ontologyBLASTP
20716482071809162protein of unknown function DUF1328QuickGO ontology
20723582072969612hypothetical proteinBLASTP
207295120739671017hypothetical proteinBLASTP
20741862075169984protein of unknown function DUF1568QuickGO ontologyBLASTP
207609420773831290hypothetical proteinBLASTP
20776662078073408hypothetical proteinBLASTP
20791682079488321hypothetical proteinBLASTP
20796462080122477SsrA-binding proteinQuickGO ontologyBLASTP
20802482080679432cyclasedehydraseQuickGO ontologyBLASTP
20806762081002327protein of unknown function UPF0125QuickGO ontologyBLASTP
20810432081726684hypothetical proteinBLASTP
20819242082736813protein of unknown function DUF299QuickGO ontologyBLASTP
208294820853232376phosphoenolpyruvate synthaseQuickGO ontologyBLASTP
20854912085739249hypothetical protein
208597420890153042FAD linked oxidase-likeQuickGO ontologyBLASTP