Pre_GI Help


Sequence similarity hits between islands were identified by means of BLASTN.
E-value threshold was set at 10 ^ -6.
General and taxonomic information for the host of the query cds is displayed in the information box.
The search boxes will filter all subject hits to obtain specific hits.
It is also possible to order the lists by means of highlighted column headings.

Order hit subject list by means of columns

Subject Host Description - This will list subject hits alphabetically according to their hosts.
E-value - Subject list is ordered by ascending e-values.
Bit score - Default. Order list by descending bit scores.


This column indicates the specific subject found to have a hit with the query.
Subject is hyperlinked to the island page where it is located.

Visual representation of the hits are possible and available as BLASTN or BLASTP svg.
The text file generated for use in the visual representation is also available and contains additional information.