Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:926479 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
9254339264821050dipeptidase putativeQuickGO ontologyBLASTP
9264799279301452aldehyde dehydrogenase family proteinQuickGO ontologyBLASTP
928082928957876transcriptional regulator LysR familyQuickGO ontologyBLASTP
9290369300911056hypothetical proteinBLASTP
930194930571378endoribonuclease putativeQuickGO ontologyBLASTP
9305989317341137FAD dependent oxidoreductaseQuickGO ontologyBLASTP
931900932529630DNA-binding proteinQuickGO ontologyBLASTP
933430933978549acetyltransferase GNAT familyQuickGO ontologyBLASTP
934135934989855transcriptional regulator AraC familyQuickGO ontologyBLASTP
935798935929132hypothetical protein
938775939062288hypothetical proteinBLASTP
9392759420852811oxidoreductase FAD-bindingQuickGO ontologyBLASTP
942082942753672hypothetical proteinBLASTP
9427539442071455iron-sulfur cluster binding proteinQuickGO ontologyBLASTP
944204945028825cysteine-rich domain proteinQuickGO ontologyBLASTP