Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:833721 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
833721834005285addiction module toxin RelEStbE familyQuickGO ontologyBLASTP
833995834246252hypothetical proteinBLASTP
8345098368362328phageplasmid primase P4 familyQuickGO ontologyBLASTP
836847837188342hypothetical proteinBLASTP
837185837451267hypothetical proteinBLASTP
837448837642195hypothetical proteinBLASTP
837635838179545BLASTP
838188838412225hypothetical proteinBLASTP
838409838669261phage transcriptional regulator AlpAQuickGO ontologyBLASTP
839217839978762hypothetical proteinBLASTP
839975840223249transcriptional activator OgrdeltaQuickGO ontologyBLASTP
8406618425861926hypothetical proteinBLASTP
842579843070492hypothetical proteinBLASTP
843070843651582hypothetical proteinBLASTP
843638844000363hypothetical protein
8440428452501209integrase family proteinQuickGO ontologyBLASTP
845847846329483SsrA-binding proteinQuickGO ontologyBLASTP
846485846931447cyclasedehydraseQuickGO ontologyBLASTP
846912847202291hypothetical proteinBLASTP
847441847776336SmpAOmlA domain proteinQuickGO ontologyBLASTP
8479308495911662DNA repair protein RecNQuickGO ontologyBLASTP
849673850569897ATP-NADAcoX kinaseQuickGO ontologyBLASTP
850700851287588GrpE proteinQuickGO ontologyBLASTP
8515298527671239Mn2Fe2 transporter NRAMP familyQuickGO ontologyBLASTP
8528928530982074-oxalocrotonate tautomerase family enzymeQuickGO ontologyBLASTP
8531128542781167hypothetical proteinBLASTP
8544788555751098iron-containing alcohol dehydrogenaseQuickGO ontologyBLASTP
855945856526582NUDIX hydrolaseQuickGO ontologyBLASTP
8569088581731266extracellular solute-binding protein family 1QuickGO ontologyBLASTP
858237859118882binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
859120859932813binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
8599698610541086ABC transporter relatedQuickGO ontologyBLASTP
8612678627901524Arabinogalactan endo-14-beta-galactosidaseQuickGO ontologyBLASTP
8628718639021032transcriptional regulator LacI familyQuickGO ontologyBLASTP
864129865064936transcriptional antiterminator BglGQuickGO ontologyBLASTP
8651478665741428Beta-glucosidaseQuickGO ontologyBLASTP
8666418685451905PTS system beta-glucoside-specific IIABC subunitQuickGO ontologyBLASTP
8688358708291995transketolaseQuickGO ontologyBLASTP
870845871795951transaldolaseQuickGO ontologyBLASTP