Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:2788164 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27881642789030867putative cytochrome C assembly proteinQuickGO ontologyBLASTP
278907527903371263CBStransporter associated domain proteinQuickGO ontologyBLASTP
27903922790985594co-chaperone GrpEQuickGO ontologyBLASTP
27911082791986879NAD kinaseQuickGO ontologyBLASTP
279207227937331662DNA repair protein RecNQuickGO ontologyBLASTP
27938822794223342lipoprotein SmpAOmlA familyQuickGO ontologyBLASTP
27942852794575291RnfH family proteinQuickGO ontologyBLASTP
27945652795002438polyketide cyclasedehydrase family proteinQuickGO ontologyBLASTP
27951732795655483SsrA-binding proteinQuickGO ontologyBLASTP
27958692796231363tmRNAQuickGO ontologyBLASTP
27968782797246369hypothetical proteinBLASTP
2797526279761893hypothetical protein
27975942797788195DinI family proteinQuickGO ontologyBLASTP
27980262798973948hypothetical proteinBLASTP
27990862799670585tail fiber assembly proteinQuickGO ontologyBLASTP
27998162800319504IS1 transposase orfBQuickGO ontologyBLASTP
28002382800513276IS1 transposase orfAQuickGO ontologyBLASTP
28007432801225483conserved hypothetical protein truncationQuickGO ontologyBLASTP
28012872802099813ISEhe3 transposase orfBQuickGO ontologyBLASTP
28021562802434279ISEhe3 transposase orfAQuickGO ontologyBLASTP
28024722802585114hypothetical protein
28029632803115153hypothetical proteinBLASTP
2803207280328276tRNA-MetQuickGO ontologyBLASTP
280384228060942253alpha amylase family proteinQuickGO ontologyBLASTP
28064302807407978protein CsiDQuickGO ontologyBLASTP