Pre_GI: BLASTP Hits

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Query: NC_004851:191709:212967 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 212967, End: 213134, Length: 168

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:212849212849213016168Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceputative transposase4e-1373.2
NC_007606:4182188:418874241887424189452711Shigella dysenteriae Sd197, complete genomeputative transposase2e-0961.6
NC_012912:1701231:1712751171275117139591209Dickeya zeae Ech1591, complete genometransposase mutator type1e-0858.2
NC_012912:2285778:2290080229008022912881209Dickeya zeae Ech1591, complete genometransposase mutator type1e-0858.2
NC_012214:1212616:1227993122799312292011209Erwinia pyrifoliae Ep1/96, complete genomeTransposase4e-0857
NC_012214:537000:5447465447465459541209Erwinia pyrifoliae Ep1/96, complete genomeTransposase4e-0857
NC_008150:2822689:2823601282360128248091209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008149:1842500:1849745184974518509531209Yersinia pestis Nepal516, complete genometransposase for the IS285 insertion element6e-0856.2
NC_004088:2366000:2377868237786823790761209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_004088:1909880:1925062192506219262701209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_010159:1288000:1298949129894913001571209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_010159:3033989:3048073304807330492811209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_010159:2955562:2955562295556229567701209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_010159:2252380:2270709227070922719171209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_003143:3115933:3128498312849831297061209Yersinia pestis CO92, complete genometransposase for the IS285 insertion element6e-0856.2
NC_005810:1520000:1522839152283915240471209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008118:56777:7915579155803631209Yersinia pestis Nepal516 plasmid pMT, complete sequencetransposase6e-0856.2
NC_006155:2461262:2467797246779724690051209Yersinia pseudotuberculosis IP 32953, complete genomeputative transposase6e-0856.2
NC_010159:172469:1947051947051959131209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_008150:1705152:1742178174217817433861209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_003143:2741478:2745561274556127467691209Yersinia pestis CO92, complete genometransposase for the IS285 insertion element6e-0856.2
NC_005810:3142384:3164955316495531661631209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_004838:51013:5101351013522211209Yersinia pestis KIM plasmid pMT-1, complete sequencetransposase6e-0856.2
NC_010159:3169266:3176277317627731774851209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_003143:2433190:2441131244113124423391209Yersinia pestis CO92, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008149:2773139:2788522278852227897301209Yersinia pestis Nepal516, complete genometransposase for the IS285 insertion element6e-0856.2
NC_004088:2541033:2558335255833525595431209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_008150:905000:9078309078309090381209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008149:1440371:1450478145047814516861209Yersinia pestis Nepal516, complete genometransposase for the IS285 insertion element6e-0856.2
NC_010159:409500:4169374169374181451209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_010159:409500:4125254125254137331209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_010634:2004653:2015693201569320169011209Yersinia pseudotuberculosis PB1/+, complete genometransposase mutator type6e-0856.2
NC_010158:92819:9281992819940271209Yersinia pestis Angola plasmid pMT-pPCP, complete sequencetransposase, IS256 family6e-0856.2
NC_004088:1510467:1520558152055815217661209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_005815:61148:1038181038181050261209Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completetransposase6e-0856.2
NC_005810:3021913:3028947302894730301551209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008149:1842500:1878839187883918800471209Yersinia pestis Nepal516, complete genometransposase for the IS285 insertion element6e-0856.2
NC_005810:2508671:2515485251548525166931209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_005810:3964468:3981900398190039831081209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_003134:64672:7977779777809851209Yersinia pestis CO92 plasmid pMT1, complete sequenceputative transposase6e-0856.2
NC_010159:138879:1428141428141440221209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_003143:1691000:1693966169396616951741209Yersinia pestis CO92, complete genometransposase6e-0856.2
NC_005810:3272765:3289155328915532903631209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_004088:1909880:1929438192943819306461209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_004088:2937077:2952460295246029536681209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_008150:2173708:2179207217920721804151209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_010159:2440947:2442166244216624433741209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_014618:1103239:1119852111985211210601209Enterobacter cloacae SCF1 chromosome, complete genometransposase mutator type6e-0856.2
NC_017168:2999514:3015664301566430168721209Yersinia pestis A1122 chromosome, complete genometransposase6e-0856.2
NC_017160:3094768:3106685310668531078931209Yersinia pestis D182038 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017160:2054289:2069672206967220708801209Yersinia pestis D182038 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017154:3188795:3205686320568632068941209Yersinia pestis D106004 chromosome, complete genometransposase6e-0856.2
NC_017154:3188795:3194517319451731957251209Yersinia pestis D106004 chromosome, complete genometransposase6e-0856.2
NC_017154:2876545:2883505288350528847131209Yersinia pestis D106004 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017154:2430093:2438034243803424392421209Yersinia pestis D106004 chromosome, complete genometransposase6e-0856.2
NC_017154:1707500:1710564171056417117721209Yersinia pestis D106004 chromosome, complete genometransposase6e-0856.2
NC_014029:3245778:3262670326267032638781209Yersinia pestis Z176003 chromosome, complete genometransposase6e-0856.2
NC_017168:2535732:2542747254274725439551209Yersinia pestis A1122 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017168:2626996:2632718263271826339261209Yersinia pestis A1122 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017168:2626996:2643887264388726450951209Yersinia pestis A1122 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_005810:4469156:4470457447045744716651209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017265:2940539:2948751294875129499591209Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase6e-0856.2
NC_017265:2557476:2572859257285925740671209Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase6e-0856.2
NC_017265:2263347:2279293227929322805011209Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase6e-0856.2
NC_017265:2087487:2099565209956521007731209Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase6e-0856.2
NC_017265:1765399:1785352178535217865601209Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase6e-0856.2
NC_017168:3948514:3963897396389739651051209Yersinia pestis A1122 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_017168:3290380:3290977329097732921851209Yersinia pestis A1122 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_014029:3245778:3251500325150032527081209Yersinia pestis Z176003 chromosome, complete genometransposase6e-0856.2
NC_014029:3171627:3181718318171831829261209Yersinia pestis Z176003 chromosome, complete genometransposase6e-0856.2
NC_005810:1230976:1241733124173312429411209Yersinia pestis biovar Microtus str. 91001, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008120:62000:7470974709759171209Yersinia pestis Antiqua plasmid pMT, complete sequencetransposase6e-0856.2
NC_008150:2822689:2834770283477028359781209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_003143:3115933:3117329311732931185371209Yersinia pestis CO92, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008150:2574794:2581829258182925830371209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_004088:1265730:1271452127145212726601209Yersinia pestis KIM, complete genometransposase6e-0856.2
NC_008150:1705152:1713093171309317143011209Yersinia pestis Antiqua, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008149:1195614:1201336120133612025441209Yersinia pestis Nepal516, complete genometransposase for the IS285 insertion element6e-0856.2
NC_003143:3191246:3198261319826131994691209Yersinia pestis CO92, complete genometransposase for the IS285 insertion element6e-0856.2
NC_010159:2440947:2450599245059924518071209Yersinia pestis Angola, complete genomeIS285, transposase6e-0856.2
NC_009378:62215:8263382633838411209Yersinia pestis Pestoides F plasmid MT, complete sequencetransposase6e-0856.2
NC_014029:2335021:2352323235232323535311209Yersinia pestis Z176003 chromosome, complete genometransposase6e-0856.2
NC_014029:2138000:2142080214208021432881209Yersinia pestis Z176003 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_014029:1760948:1768471176847117696791209Yersinia pestis Z176003 chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:775357:7968047968047980121209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:2491427:2498480249848024996881209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:1362471:1363045136304513642531209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:1258396:1274855127485512760631209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:1064227:1086795108679510880031209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_009381:1064227:1065446106544610666541209Yersinia pestis Pestoides F chromosome, complete genometransposase for the IS285 insertion element6e-0856.2
NC_008150:2173708:217647421764742177286813Yersinia pestis Antiqua, complete genomeputative transposase7e-0855.8
NC_017168:3535786:353578635357863536646861Yersinia pestis A1122 chromosome, complete genomehypothetical protein7e-0855.8
NC_008149:1122693:114937611493761149951576Yersinia pestis Nepal516, complete genometransposase7e-0855.8
NC_017265:2306500:231172923117292312589861Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative transposase1e-0755.5
NC_008149:2517538:252671025267102527570861Yersinia pestis Nepal516, complete genomehypothetical protein1e-0755.5
NC_012214:3931824:3940806394080639420141209Erwinia pyrifoliae Ep1/96, complete genomeTransposase2e-0754.3
NC_011205:1391971:141001014100101410867858Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transposase4e-0753.5
NC_012125:600586:613579613579613812234Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein5e-0753.1
NC_012214:3502992:3504139350413935053471209Erwinia pyrifoliae Ep1/96, complete genometransposase6e-0752.8
NC_006511:1063249:1084442108444210855901149Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-0652
NC_012125:1897611:191910319191031919435333Salmonella enterica subsp. enterica serovar Paratyphi C straintransposase2e-0651.6
NC_011083:1993672:200466120046612005518858Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0651.6
NC_016856:1957263:196825919682591969116858Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein1e-0651.6
NC_016860:1943203:195419919541991955056858Salmonella enterica subsp. enterica serovar Typhimurium strtransposase1e-0651.6
NC_016863:1905454:191645019164501917307858Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transposase1e-0651.6
NC_011080:1944226:196187019618701962727858Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0651.6
NC_011149:4474012:448662644866264487159534Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-0650.8
NC_006511:529424:537755537755538302548Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0650.8
NC_011205:2621415:263082526308252631325501Salmonella enterica subsp. enterica serovar Dublin str. CT_020218532e-0650.8
NC_011274:2483038:249459424945942495094501Salmonella enterica subsp. enterica serovar Gallinarum str. 287/912e-0650.8
NC_016831:531404:539783539783540283501Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-0650.8
NC_011294:2492168:250378325037832504223441Salmonella enterica subsp. enterica serovar Enteritidis str2e-0650.8
NC_003198:2453074:246462824646282465128501Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-0650.4
NC_016832:531208:539538539538539810273Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-0650.4
NC_003198:1867456:1878054187805418792141161Salmonella enterica subsp. enterica serovar Typhi str. CT18,4e-0650.4