Pre_GI Gene

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Host: NC_011080 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011080:1944226 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
194298019442631284integral membrane protein PqiA familyQuickGO ontologyBLASTP
194422619468652640mce-related proteinQuickGO ontologyBLASTP
194684119483821542ribosomal RNA small subunit methyltransferase FQuickGO ontologyBLASTP
19484971948736240hypothetical proteinBLASTP
19489041949038135hypothetical proteinBLASTP
19490571949707651serinethreonine-protein phosphatase 1QuickGO ontologyBLASTP
19497251949898174hypothetical proteinBLASTP
19499311950095165putative inner membrane proteinQuickGO ontologyBLASTP
19501571950306150hypothetical proteinBLASTP
19503801951102723guanine nucleotide exchange factor SopEQuickGO ontologyBLASTP
19513681951514147hypothetical proteinBLASTP
19518011952181381putative cytoplasmic proteinQuickGO ontologyBLASTP
19524971952973477hypothetical proteinBLASTP
19534531953584132hypothetical protein
19536951953811117hypothetical protein
19538471953975129hypothetical protein
19542711954444174hypothetical protein
19554631955612150hypothetical protein
195594119569511011putative O-actetyl transferase related proteinQuickGO ontologyBLASTP
19584731958589117hypothetical protein
19589511959085135hypothetical protein
19605721960766195hypothetical proteinBLASTP
19609891961135147hypothetical proteinBLASTP
19628511963219369putative cytoplasmic proteinQuickGO ontologyBLASTP
19636961963896201hypothetical proteinBLASTP
19645141965428915protein PagOQuickGO ontologyBLASTP
19655611965719159hypothetical proteinBLASTP
19657231966343621putative inner membrane proteinQuickGO ontologyBLASTP
19668311966977147hypothetical proteinBLASTP
19674911967616126arsenical pump membrane proteinQuickGO ontologyBLASTP
19684821969363882caudovirales tail fibre assembly proteinQuickGO ontologyBLASTP
19695181969781264gifsy-2 prophage proteinQuickGO ontologyBLASTP
19698361970024189hypothetical proteinBLASTP
19700891970256168hypothetical proteinBLASTP
19715211972468948exodeoxyribonuclease 8QuickGO ontologyBLASTP
197246519735441080phage integraseQuickGO ontologyBLASTP
19739171974270354hypothetical proteinBLASTP
19742871975162876copper resistance protein DQuickGO ontologyBLASTP
19751631975537375copper resistance protein CopCQuickGO ontologyBLASTP
19756751975905231hypothetical proteinBLASTP
19760131976669657hydrolase carbon-nitrogen familyQuickGO ontologyBLASTP
19766931977391699exodeoxyribonuclease 10QuickGO ontologyBLASTP
197742819794792052protease 2QuickGO ontologyBLASTP
19796931980352660inner membrane protein YebEQuickGO ontologyBLASTP