Pre_GI Gene

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Host: NC_012125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:600586 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6005866031982613outer membrane usher protein FimDQuickGO ontologyBLASTP
6032136042201008FimH proteinQuickGO ontologyBLASTP
604230604748519fimbrial proteinQuickGO ontologyBLASTP
606030606752723fimbriae Y proteinQuickGO ontologyBLASTP
606771607082312hypothetical proteinBLASTP
607244607840597fimbriae w proteinQuickGO ontologyBLASTP
607796608032237hypothetical proteinBLASTP
608510608635126Transposase within prophageQuickGO ontologyBLASTP
609844610206363glycosyl translocaseQuickGO ontologyBLASTP
610203611129927glycosyltransferaseQuickGO ontologyBLASTP
6111196125731455hypothetical proteinBLASTP
612617612745129TnpAQuickGO ontologyBLASTP
612922613173252IS285 transposaseQuickGO ontologyBLASTP
613348613470123transposaseQuickGO ontologyBLASTP
613579613812234hypothetical proteinBLASTP
6139006154861587hypothetical proteinBLASTP
615483616409927glycosyltransferaseQuickGO ontologyBLASTP
616406616768363glycosyl translocaseQuickGO ontologyBLASTP
617196617420225hypothetical proteinBLASTP
617634617963330sensor kinaseQuickGO ontologyBLASTP
6193086206331326pyridine nucleotide-disulfide oxidoreductaseQuickGO ontologyBLASTP
620790621026237hypothetical proteinBLASTP
621039621599561hypothetical proteinBLASTP
6216786228531176DNA repair ATPaseQuickGO ontologyBLASTP
6231796245731395phenylalanine transporterQuickGO ontologyBLASTP