Pre_GI: BLASTP Hits

Some Help

Query: NC_007607:87000:114511 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 114511, End: 115803, Length: 1293

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007607:87000:1089721089721101801209Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase0797
NC_007608:97092:1183971183971196051209Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase0780
NC_007606:3755155:3755155375515537563631209Shigella dysenteriae Sd197, complete genomeIS1294 ORF0779
NC_007608:97092:1146531146531158521200Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase0762
NC_010660:175200:1954511954511966501200Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase0750
NC_004851:191709:2114272114272126231197Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS1294 transposase0739
NC_010660:175200:2009632009632021471185Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase0697
NC_017319:192482:211681211681212505825Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase1e-152539
NC_009837:92000:934139341394240828Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencetransposase1e-141503
NC_013364:1997891:2022346202234620235331188Escherichia coli O111:H- str. 11128, complete genomeputative IS91 transposase6e-64245
NC_004337:1783645:1802878180287818040651188Shigella flexneri 2a str. 301, complete genomeIS91 ORF1e-62241
NC_017328:1835108:1855376185537618566081233Shigella flexneri 2002017 chromosome, complete genomeIS91 ORF2e-62240
NC_004741:1823000:1839823183982318410431221Shigella flexneri 2a str. 2457T, complete genomeIS91 orf5e-62238
NC_008258:1784637:1802316180231618033891074Shigella flexneri 5 str. 8401, complete genomeIS91 ORF5e-57222
NC_014228:4360676:437700743770074377915909Xenorhabdus nematophila ATCC 19061, complete genometransposase (fragment)4e-54212
NC_019897:209523:2161202161202173671248Thermobacillus composti KWC4 chromosome, complete genometransposase5e-36152
NC_009837:92000:943039430394704402Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein5e-34145
NC_008340:2034810:2053054205305420543431290Alkalilimnicola ehrlichei MLHE-1, complete genomeputative transposase3e-33143
NC_007941:11319:269612696127227267Escherichia coli UTI89 plasmid pUTI89, complete sequencetransposase4e-33142
NC_009786:43331:579845798458729746Escherichia coli E24377A plasmid pETEC_80, complete sequence2e-32140
NC_009786:43331:546075460755352746Escherichia coli E24377A plasmid pETEC_80, complete sequence2e-32140
NC_009483:3331500:3331529333152933327041176Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase2e-30134
NC_020291:2291418:2312284231228423134441161Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative transposase3e-29129
NC_015914:4248000:4261796426179642629681173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase4e-29129
NC_015914:4248000:4256781425678142579531173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase4e-29129
NC_014098:1670327:1687221168722116883481128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase9e-29128
NC_014098:2809689:2814351281435128154781128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase9e-29128
NC_012586:897148:9016139016139027911179Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase number 2 for insertion sequence NGRIS-16c5e-27122
NC_017319:192482:211310211310211573264Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase2e-26120
NC_016048:797762:8025328025328036261095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_016048:987699:9961059961059971991095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_016048:2907702:2987542298754229886361095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_007626:959684:9953579953579965291173Magnetospirillum magneticum AMB-1, complete genomePutative transposase Y4QJ2e-25117
NC_021184:3497000:3498189349818934993341146Desulfotomaculum gibsoniae DSM 7213, complete genomePutative transposase3e-25116
NC_015675:2839000:2857550285755028587431194Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase4e-23109
NC_009997:2069894:2071438207143820725561119Shewanella baltica OS195, complete genomeputative transposase1e-22108
NC_016901:2070121:2072025207202520731431119Shewanella baltica OS678 chromosome, complete genometransposase1e-22108
NC_009790:42112:649406494065209270Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS1294, transposase, truncation8e-23108
NC_018645:2390032:2402814240281424038991086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family7e-23108
NC_018645:2390032:2390032239003223911171086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family7e-23108
NC_010625:1602191:1606485160648516077051221Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceputative transposase5e-23108
NC_015703:5865921:5882682588268258850812400Runella slithyformis DSM 19594 chromosome, complete genome2e-22107
NC_013062:1298500:1301324130132413024301107Flavobacteriaceae bacterium 3519-10, complete genometransposase3e-22106
NC_014923:2672000:2690550269055026916441095Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completetransposase5e-22105
NC_019973:2744000:2762603276260327636971095Mesorhizobium australicum WSM2073, complete genomePutative transposase5e-22105
NC_018721:2872780:2875568287556828767131146Psychroflexus torquis ATCC 700755 chromosome, complete genometransposase, IS91 family2e-21103
NC_019902:2943719:2958875295887529600081134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative4e-21102
NC_014836:2620871:2629601262960126307101110Desulfurispirillum indicum S5 chromosome, complete genometransposase for insertion sequence 801 (transposase 32 family protein)4e-21102
NC_015572:2713599:2720014272001427211261113Methylomonas methanica MC09 chromosome, complete genometransposase1e-20101
NC_015186:2197236:2255598225559822567911194Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element2e-20100
NC_009483:3644677:3678183367818336792801098Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase5e-2099.4
NC_019902:1681320:1693466169346616945991134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative2e-1997.4
NC_016048:2907702:299990729999073000872966Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase1e-1894.7
NC_012791:4736084:4752157475215747533531197Variovorax paradoxus S110 chromosome 1, complete genomeputative transposase2e-1894
NC_012108:4971086:499654649965464997478933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)2e-1893.6
NC_012108:2220983:222098322209832221915933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)2e-1893.6
NC_010681:1202929:1217523121752312186921170Burkholderia phytofirmans PsJN chromosome 1, complete sequenceputative transposase2e-1790.9
NC_020908:4263552:426776842677684268616849Octadecabacter arcticus 238, complete genomeIS91 family transposase2e-1790.9
NC_013194:2020134:2034160203416020352661107Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeputative transposase3e-1790.1
NC_009483:3331500:333406533340653334634570Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein5e-1789.4
NC_020911:83717:837178371784598882Octadecabacter antarcticus 307, complete genomeIS91-family transposase2e-1687.4
NC_011894:957897:9626549626549638621209Methylobacterium nodulans ORS 2060, complete genomeputative transposase2e-1584.3
NC_010660:175200:203362203362203484123Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase5e-1582.8
NC_014923:2672000:268685626868562687743888Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete6e-1582.4
NC_019973:2744000:275890927589092759796888Mesorhizobium australicum WSM2073, complete genome6e-1582.4
NC_015675:2839000:285385628538562854743888Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase6e-1582.4
NC_020908:2466446:248083424808342481604771Octadecabacter arcticus 238, complete genomeIS91 family transposase9e-1478.6
NC_016901:2594942:2621901262190126229861086Shewanella baltica OS678 chromosome, complete genometransposase5e-1376.3
NC_009997:2635025:2661984266198426630691086Shewanella baltica OS195, complete genometransposase5e-1376.3
NC_016048:2907702:300742030074203007950531Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase2e-1273.9
NC_016048:308342:335072335072335743672Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase3e-1169.7
NC_013194:761166:774114774114775037924Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeputative transposase2e-1067.4
NC_012108:2874831:290174329017432902423681Desulfobacterium autotrophicum HRM2, complete genometransposase (IS801 family protein)3e-1067
NC_011753:1680738:169142916914291692160732Vibrio splendidus LGP32 chromosome 1, complete genomePartial transposase ; IS91 family6e-1065.9
NC_016626:1825845:186187418618741862758885Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase3e-0963.2
NC_007608:97092:120973120973121275303Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS600 ORF18e-0962
NC_010660:86445:898198981990121303Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceISSd1, transposase orfA/B, fusion8e-0962
NC_017319:192482:216256216256216558303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF19e-0962
NC_007607:87000:112235112235112537303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF11e-0861.6
NC_007607:87000:119107119107119409303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF11e-0861.6
NC_004851:191709:216373216373216756384Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF11e-0861.6
NC_007385:157516:173682173682173984303Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF11e-0758.2
NC_004337:309833:312636312636312938303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0758.2
NC_004851:191709:207182207182207484303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF11e-0758.2
NC_013361:1754346:176055717605571760859303Escherichia coli O26:H11 str. 11368 chromosome, complete genomeIS600 transposase OrfA1e-0758.2
NC_016822:1304398:131698713169871317289303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_016822:267758:285694285694285996303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_007606:1209132:122620412262041226506303Shigella dysenteriae Sd197, complete genomeIS600 ORF11e-0758.2
NC_004741:4364235:438247743824774382779303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA1e-0758.2
NC_007384:2007467:201384820138482014150303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0758.2
NC_011750:4947500:496278849627884963087300Escherichia coli IAI39 chromosome, complete genome1e-0758.2
NC_007384:1320287:132157813215781321880303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0758.2
NC_004741:310382:325572325572325874303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA1e-0758.2
NC_008258:1873805:188486918848691885171303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF11e-0758.2
NC_007607:87000:932249322493526303Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF11e-0758.2
CP002797:4603787:464303946430394643407369Escherichia coli NA114, complete genomeTransposase ORF A IS6001e-0758.2
NC_016822:2678691:269889826988982699200303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_016822:2940000:294105129410512941353303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_012967:4473368:449367244936724493974303Escherichia coli B str. REL606 chromosome, complete genomeIS600 ORF1-like protein1e-0758.2
NC_012947:3917619:392013439201343920436303Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS3/IS911 family protein1e-0758.2
NC_004337:309833:326428326428326730303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0758.2
NC_011750:1094000:109946510994651099767303Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6001e-0758.2
NC_011750:1565000:156675015667501567052303Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS6001e-0758.2
NC_004431:3409389:342678534267853427087303Escherichia coli CFT073, complete genomeUnknown in IS1e-0758.2
NC_010658:1933605:194825719482571948565309Shigella boydii CDC 3083-94, complete genometransposase family1e-0758.2
NC_008258:1873805:188102618810261881328303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF11e-0758.2
NC_007613:1038000:103815610381561038458303Shigella boydii Sb227, complete genomeIS600 ORF11e-0758.2
NC_016822:3420826:342645334264533426755303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_016822:3420826:343631334363133436615303Shigella sonnei 53G, complete genomeIS600 orf11e-0758.2
NC_004741:4160500:416301941630194163318300Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA1e-0758.2
NC_017328:3625000:364538636453863645685300Shigella flexneri 2002017 chromosome, complete genomeISSd1, transposase orfA/B, fusion1e-0758.2
NC_017319:155958:168379168379168681303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF11e-0758.2
NC_004337:1065609:108078010807801081082303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0758.2
NC_007385:157516:165069165069165371303Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF11e-0757.8
NC_007384:1320287:133414613341461334448303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:307013:321696321696321998303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:2007467:202540920254092025711303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:1320287:134239213423921342694303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:307013:317534317534317836303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:3741708:376267337626733762975303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_007384:3741708:375612437561243756426303Shigella sonnei Ss046, complete genomeIS600 ORF11e-0757.8
NC_004337:309833:331258331258331620363Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0757.8
NC_016812:258500:287958287958288617660Sinorhizobium fredii HH103, complete genomeputative transposase y4qJ2e-0757.8
NC_008258:4345400:436204943620494362249201Shigella flexneri 5 str. 8401, complete genomeIS600 ORF12e-0757.8
NC_013008:1307392:133951013395101339851342Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-0757.8
NC_016822:1304398:132601013260101326312303Shigella sonnei 53G, complete genomeIS600 ORF11e-0757.8
NC_016822:3946500:395283039528303953132303Shigella sonnei 53G, complete genomeIS600 ORF11e-0757.8
NC_004337:3590323:385737038573703857672303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0757.8
NC_004337:309833:316047316047316349303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0757.8
NC_004741:2593012:259418725941872594489303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA1e-0757.8
NC_004337:2185282:220379322037932204095303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0757.8
NC_004337:3590323:391147039114703911772303Shigella flexneri 2a str. 301, complete genomeIS600 ORF11e-0757.8
NC_008258:1934479:193915719391571939459303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF11e-0757.8
NC_004741:310382:315192315192315494303Shigella flexneri 2a str. 2457T, complete genomeIS600 orfA1e-0757.8
NC_004741:2169877:218454121845412184843303Shigella flexneri 2a str. 2457T, complete genome1e-0757.8
NC_008258:1076922:109882210988221099124303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF11e-0757.8
NC_000913:4494773:450659745065974506965369Escherichia coli K12, complete genometransposase1e-0757.8
NC_010473:4596500:460840546084054608773369Escherichia coli str. K-12 substr. DH10B, complete genome1e-0757.8
AC_000091:4501430:451325445132544513622369Escherichia coli W3110 DNA, complete genome1e-0757.8
NC_008258:2190635:2205080220508022083353256Shigella flexneri 5 str. 8401, complete genome4e-0756.2
NC_004741:2169877:2184286218428621901225837Shigella flexneri 2a str. 2457T, complete genome6e-0755.8
NC_007606:1515403:153355015335501533852303Shigella dysenteriae Sd197, complete genomeIS600 ORF16e-0755.8
NC_004851:191709:197582197582197884303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF16e-0755.8
NC_017319:192482:207065207065207367303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF17e-0755.5
NC_017319:192482:197510197510197812303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF17e-0755.5
NC_008258:2045000:205839320583932058695303Shigella flexneri 5 str. 8401, complete genomeIS600 ORF17e-0755.5
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase1e-0654.7
NC_016812:258500:287455287455287919465Sinorhizobium fredii HH103, complete genomeputative transposase y4qJ2e-0654.3
NC_008258:3550500:357109635710963571395300Shigella flexneri 5 str. 8401, complete genomeIS600 ORF12e-0654.3