Pre_GI: BLASTP Hits

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Query: NC_003306:22228:28825 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 28825, End: 29379, Length: 555

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:291322913229686555Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein1e-89328
NC_003063:304962:325978325978326805828Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-76284
NC_003305:1743939:174795317479531748780828Agrobacterium tumefaciens str. C58 chromosome linear, completeIS426 transposase2e-76284
NC_009428:725871:750857750857751690834Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeintegrase catalytic subunit2e-47188
NC_010511:7024412:704739270473927048213822Methylobacterium sp. 4-46 chromosome, complete genomeintegrase catalytic subunit5e-36150
NC_002937:2263763:227799322779932278835843Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfB6e-34143
NC_002937:2068117:211183521118352112677843Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfB6e-34143
NC_015136:1101725:112641911264191127261843Burkholderia sp. CCGE1001 chromosome 1, complete sequenceintegrase catalytic subunit6e-30130
NC_003047:3360000:341101134110113411841831Sinorhizobium meliloti 1021, complete genomeTRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM12e-29128
NC_015381:1318818:133301213330121333755744Burkholderia gladioli BSR3 chromosome 1, complete sequencetransposase2e-28125
NC_015740:110633:118152118152118979828Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase for insertion element1e-28125
NC_012721:1635999:164348016434801644322843Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase1e-28125
NC_015740:3486226:349605834960583496885828Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase for insertion element1e-28125
NC_012724:2547500:257358325735832574425843Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase2e-28124
NC_016812:258500:289436289436290266831Sinorhizobium fredii HH103, complete genome4e-28124
NC_008740:3520500:352394035239403524755816Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region5e-28124
NC_015593:1587684:159353615935361594381846Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeIntegrase catalytic protein8e-28123
NC_016626:1699500:171292817129281713770843Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase7e-28123
NC_014121:677799:686386686386686934549Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase2e-27122
NC_014121:2090630:209930220993022100138837Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-27122
NC_014121:3553809:356179035617903562626837Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-27122
NC_014121:1682638:171493117149311715767837Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-27122
NC_014121:5000069:500117150011715002007837Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-27122
NC_014121:4299500:431688943168894317560672Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-27122
NC_013446:2655955:266808526680852668948864Comamonas testosteroni CNB-2, complete genomeIntegrase, catalytic region2e-27121
NC_013446:2820000:284235228423522843215864Comamonas testosteroni CNB-2, complete genometransposase2e-27121
NC_013446:4511602:452719045271904528053864Comamonas testosteroni CNB-2, complete genometransposase2e-27121
NC_013446:4281250:428570042857004286563864Comamonas testosteroni CNB-2, complete genometransposase2e-27121
NC_014121:2330451:234248723424872343302816Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-26119
NC_015138:4205986:422296842229684223861894Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeintegrase catalytic region3e-26117
NC_008543:127675:146447146447147178732Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceIntegrase, catalytic region5e-26117
NC_008061:2106848:212259221225922123323732Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceIntegrase, catalytic region5e-26117
NC_009649:94871:952249522496105882Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,putative transposase6e-26117
NC_009649:94871:103459103459104340882Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein6e-26117
NC_010515:1205258:120863812086381209540903Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region1e-25116
NC_007651:2166000:217422821742282175121894Burkholderia thailandensis E264 chromosome I, complete sequencetransposase9e-26116
NC_010515:2111691:212738121273812128217837Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region7e-26116
NC_010515:2691000:270790727079072708743837Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region7e-26116
NC_010515:2111691:217244221724422173278837Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceIntegrase catalytic region7e-26116
NC_007973:2150962:216482121648212165657837Ralstonia metallidurans CH34 chromosome 1, complete sequenceIntegrase, catalytic region2e-25115
NC_014931:5573942:557973455797345580666933Variovorax paradoxus EPS chromosome, complete genomeIntegrase catalytic region1e-25115
NC_014931:4210029:421695842169584217890933Variovorax paradoxus EPS chromosome, complete genomeIntegrase catalytic region1e-25115
NC_014931:1642179:165449916544991655431933Variovorax paradoxus EPS chromosome, complete genomeIntegrase catalytic region1e-25115
NC_014931:4210029:421228242122824213214933Variovorax paradoxus EPS chromosome, complete genomeIntegrase catalytic region1e-25115
NC_014931:4985500:4989767498976749910501284Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein1e-25115
NC_011083:4547825:460419546041954605076882Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-25115
NC_007973:2773427:278000127800012780837837Ralstonia metallidurans CH34 chromosome 1, complete sequenceIntegrase, catalytic region2e-25115
NC_010508:1980689:199196819919681992813846Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceIntegrase catalytic region6e-25113
NC_007650:420745:439734439734440621888Burkholderia thailandensis E264 chromosome II, complete sequencetransposase1e-24112
NC_010498:1659328:166298716629871663892906Escherichia coli SMS-3-5, complete genomeIS2 transposase orfB2e-24112
NC_010498:1094000:110231311023131103218906Escherichia coli SMS-3-5, complete genomeIS2 transposase orfB2e-24112
NC_010498:1210145:121252212125221213427906Escherichia coli SMS-3-5, complete genomeIS2 transposase orfB2e-24112
NC_003295:2507850:253046725304672531354888Ralstonia solanacearum GMI1000, complete genomeISRSO10-TRANSPOSASE ORFB PROTEIN2e-24112
NC_011002:703194:716687716687717574888Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative transposase1e-24112
NC_014117:132524:164228164228165121894Burkholderia sp. CCGE1002 chromosome chromosome 1, completeIntegrase catalytic region1e-24112
NC_014118:1528851:153941315394131540306894Burkholderia sp. CCGE1002 chromosome chromosome 2, completeIntegrase catalytic region1e-24112
NC_006625:63342:666006660067154555Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceIS2 transposase1e-24112
NC_007650:84140:106194106194107081888Burkholderia thailandensis E264 chromosome II, complete sequencetransposase1e-24112
NC_007651:1726472:173757817375781738465888Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-24112
NC_007651:1620000:164785916478591648746888Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-24112
NC_007651:3064530:315514531551453156032888Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-24112
NC_004431:3409389:345136634513663452271906Escherichia coli CFT073, complete genomeinsertion sequence 2 OrfB protein2e-24111
NC_011751:3453683:347301734730173473922906Escherichia coli UMN026 chromosome, complete genomeinsertion element IS2 transposase InsD2e-24111
NC_014121:489500:513684513684514565882Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase6e-24110
NC_011002:703194:711610711610712497888Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative transposase6e-24110
NC_015424:2462522:247848324784832479361879Aeromonas veronii B565 chromosome, complete genomeinsertion element IS2 transposase InsD7e-24110
NC_009837:92000:106687106687107592906Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceInsD1e-23109
NC_016822:3065426:307037430703743071279906Shigella sonnei 53G, complete genomeIS2 transposase TnpB1e-23109
NC_004337:3590323:360514936051493606054906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein1e-23109
NC_009790:42112:421124211243023912Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS2, transposase orfB1e-23109
NC_007384:2933625:293907029390702939909840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23109
NC_007384:3741708:375380637538063754645840Shigella sonnei Ss046, complete genomeIS2 ORF29e-24109
AC_000091:3180275:318516631851663186071906Escherichia coli W3110 DNA, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_010473:3273882:328227732822773283182906Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_010473:3069529:308826430882643089169906Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_010473:4596500:459842645984264599331906Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS2 insertion element transposase InsAB'2e-23108
NC_010658:1933605:195212319521231953028906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB2e-23108
NC_010658:1772994:178351617835161784421906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB2e-23108
NC_010658:3622610:362809536280953629000906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB2e-23108
NC_000913:3176000:318453231845323185437906Escherichia coli K12, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_009788:16360:291632916330068906Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS2, transposase orfB2e-23108
NC_000913:4494773:449661844966184497523906Escherichia coli K12, complete genomeKpLE2 phage-like element; IS2 insertion element transposase InsAB'2e-23108
AC_000091:4501430:450327545032754504180906Escherichia coli W3110 DNA, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_014311:1635408:165338416533841654169786Ralstonia solanacearum PSI07 chromosome, complete genometransposase2e-23108
NC_004741:4160500:416794941679494168833885Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfB protein3e-23108
NC_008258:3224721:324507832450783245917840Shigella flexneri 5 str. 8401, complete genomeIS2 ORF23e-23108
NC_017319:155958:172569172569173420852Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS2 ORF23e-23108
NC_008258:1934479:195544719554471956286840Shigella flexneri 5 str. 8401, complete genomeIS2 ORF23e-23108
NC_004337:3049118:308005630800563080844789Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein2e-23108
NC_004337:2035945:203508220350822035987906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein2e-23108
NC_004851:157675:170327170327171064738Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS2 ORF22e-23108
NC_016822:3282654:330018633001863301091906Shigella sonnei 53G, complete genomeIS2 transposase TnpB2e-23108
NC_008258:2542863:255561825556182556457840Shigella flexneri 5 str. 8401, complete genomeIS2 ORF22e-23108
NC_014307:1131241:114198811419881142836849Ralstonia solanacearum CFBP2957 chromosome, complete genomeis2 insertion element transposase insab'; cp4-44 prophage2e-23108
NC_000913:2975659:299439429943942995299906Escherichia coli K12, complete genomeIS2 insertion element transposase InsAB'2e-23108
AC_000091:2976293:299502829950282995933906Escherichia coli W3110 DNA, complete genomeIS2 insertion element transposase InsAB'2e-23108
NC_012759:2862807:288154228815422882447906Escherichia coli BW2952 chromosome, complete genomeinsertion element IS2 transposase InsD2e-23108
AC_000091:1083798:110563311056331106556924Escherichia coli W3110 DNA, complete genomeIS2 element protein1e-23108
NC_010658:1193225:120694412069441207849906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB1e-23108
NC_010660:33109:455234552346428906Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS2 transposase orfB1e-23108
NC_010658:1933605:194004019400401940945906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB1e-23108
NC_014310:279912:286409286409287296888Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransposase1e-23108
NC_007384:2007467:201113220111322011971840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23108
NC_007384:1086025:108909310890931089932840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23108
NC_007384:1320287:134143613414361342275840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23108
NC_007384:1737885:175038617503861751225840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23108
NC_009837:127000:127480127480128385906Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceInsD1e-23108
NC_007384:3151344:316636031663603167199840Shigella sonnei Ss046, complete genomeIS2 ORF21e-23108
NC_013364:2672837:269467026946702695575906Escherichia coli O111:H- str. 11128, complete genomeputative IS2 transposase InsAB'1e-23108
NC_012759:3063285:307168030716803072585906Escherichia coli BW2952 chromosome, complete genomeinsertion element IS2 transposase InsD2e-23108
NC_012759:4433500:443535344353534436258906Escherichia coli BW2952 chromosome, complete genomeinsertion element IS2 transposase InsD2e-23108
NC_016822:1304398:132498813249881325893906Shigella sonnei 53G, complete genomeIS2 transposase TnpB2e-23108
NC_016822:1431200:145330614533061454211906Shigella sonnei 53G, complete genomeIS2 transposase TnpB2e-23108
NC_016822:1431200:146993814699381470843906Shigella sonnei 53G, complete genomeIS2 transposase TnpB2e-23108
NC_016822:3946500:395454539545453955450906Shigella sonnei 53G, complete genomeIS2 transposase TnpB2e-23108
NC_007606:1209132:121711612171161217928813Shigella dysenteriae Sd197, complete genomeIS2 ORF21e-23108
NC_014311:1545175:155859315585931559441849Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORF 2, IS2 )1e-23108
NC_014311:2606434:261173426117342612582849Ralstonia solanacearum PSI07 chromosome, complete genometransposase1e-23108
NC_014311:3076519:310897231089723109820849Ralstonia solanacearum PSI07 chromosome, complete genometransposase1e-23108
NC_013008:1513000:152726215272621528167906Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeinsertion element IS2 transposase InsD4e-23107
NC_011353:1513000:152697415269741527879906Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeinsertion element IS2 transposase InsD4e-23107
NC_010658:1593137:161025016102501611155906Shigella boydii CDC 3083-94, complete genomeIS2 transposase orfB4e-23107
NC_002655:1655944:167002216700221670927906Escherichia coli O157:H7 EDL933, complete genomeinsertion sequence 2 OrfB protein4e-23107
NC_002695:1571389:158604615860461586951906Escherichia coli O157:H7 str. Sakai, complete genomeinsertion sequence 2 OrfB protein4e-23107
NC_007613:1353500:135942213594221360261840Shigella boydii Sb227, complete genomeIS2 ORF24e-23107
NC_007613:4119771:413300241330024133841840Shigella boydii Sb227, complete genomeIS2 ORF24e-23107
NC_017319:192482:218632218632219537906Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 transposase InsD3e-23107
NC_004337:3590323:383044938304493831354906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein3e-23107
NC_004337:2747917:276968827696882770593906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein3e-23107
NC_004337:3590323:381455638145563815461906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein3e-23107
NC_008258:3550500:356562635656263566465840Shigella flexneri 5 str. 8401, complete genomeIS2 ORF23e-23107
NC_004741:3041294:307080030708003071684885Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfB protein9e-23106
NC_004741:2009769:201175520117552012639885Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfB protein8e-23106
NC_017328:2090679:209067920906792091584906Shigella flexneri 2002017 chromosome, complete genomeIS2 orfB8e-23106
NC_017328:3088907:311971431197143120553840Shigella flexneri 2002017 chromosome, complete genomeIS2 orfB8e-23106
NC_003296:673790:708327708327709175849Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFB PROTEIN4e-22103
NC_004337:3590323:391512539151253916030906Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfB protein5e-22103
NC_013364:3701895:375242037524203753244825Escherichia coli O111:H- str. 11128, complete genomeputative IS2 transposase InsAB9e-22103
NC_016002:1048420:105411010541101054949840Pseudogulbenkiania sp. NH8B, complete genomeintegrase catalytic subunit1e-21102
NC_020209:4943734:496401149640114964751741Pseudomonas poae RE*1-1-14, complete genomeputative transposase for insertion element1e-21102
NC_020209:4943734:496710049671004967840741Pseudomonas poae RE*1-1-14, complete genomeputative transposase for insertion element1e-21102
NC_020209:1949500:196701019670101967750741Pseudomonas poae RE*1-1-14, complete genomeputative transposase for insertion element1e-21102
NC_007384:3741708:375954137595413760008468Shigella sonnei Ss046, complete genomeIS2 ORF25e-2097.1
NC_007613:1038000:105845910584591058899441Shigella boydii Sb227, complete genomeIS2 ORF23e-1994.4
NC_014107:171170:191758191758192423666Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,IS2 transposase orfB1e-1789.7
NC_012214:1117325:113055511305551130833279Erwinia pyrifoliae Ep1/96, complete genome1e-1685.9
NC_007650:832507:840112840112840819708Burkholderia thailandensis E264 chromosome II, complete sequencetransposase1e-1582.8
NC_010498:3291344:329862932986293299210582Escherichia coli SMS-3-5, complete genome4e-1580.9
NC_000913:1625500:164890516489051649561657Escherichia coli K12, complete genomeQin prophage; IS2 insertion element transposase InsAB', C-ter fragment (pseudogene)4e-1580.9
AC_000091:1627049:165259516525951653251657Escherichia coli W3110 DNA, complete genomepredicted transposase4e-1580.9
NC_010473:1712984:173853017385301739186657Escherichia coli str. K-12 substr. DH10B, complete genome4e-1580.9
NC_006625:63342:750007500075572573Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceIS2 ORF27e-1476.6
NC_014722:771483:781114781114781425312Burkholderia rhizoxinica HKI 454, complete genometransposase2e-1272.4
NC_014839:253961:3026573026573038461190Pantoea sp. At-9b plasmid pPAT9B02, complete sequence3e-1271.2
NC_012721:1986436:199334819933481993719372Burkholderia glumae BGR1 chromosome 2, complete genome5e-1167.4
NC_003296:556836:577528577528578130603Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFB PROTEIN8e-1166.6
NC_007384:1696831:169860716986071699227621Shigella sonnei Ss046, complete genomeIS2 ORF21e-0963.2
NC_015663:1902344:191449719144971914955459Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-0755.1
NC_013205:1548500:157616415761641576979816Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Integrase catalytic region8e-0753.1