Pre_GI Gene

Some Help

Host: NC_003064 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003064:22535 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22535244331899hypothetical proteinBLASTP
24600264681869hypothetical proteinBLASTP
26456281981743hypothetical proteinBLASTP
2913229686555hypothetical proteinBLASTP
2968330060378hypothetical proteinBLASTP
3124631398153hypothetical protein
31765328831119hypothetical proteinBLASTP
3307933840762hypothetical proteinBLASTP
33872350471176hypothetical proteinBLASTP
3583936735897hypothetical proteinBLASTP
3678637172387hypothetical proteinBLASTP
3832938751423hypothetical proteinBLASTP
3890439116213hypothetical protein
39547407281182hypothetical proteinBLASTP
4080241704903hypothetical proteinBLASTP
4170142588888hypothetical proteinBLASTP
42585441411557hypothetical proteinBLASTP
4415844610453hypothetical proteinBLASTP
44659458251167hypothetical proteinBLASTP
4576746507741hypothetical proteinBLASTP
4667946945267hypothetical protein
4721247448237hypothetical proteinBLASTP
4753348309777hypothetical proteinBLASTP