Pre_GI Gene

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Host: NC_003305 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003305:1743939 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
17439391744748810ABC transporter nucleotide bindingATPase proteinQuickGO ontologyBLASTP
17448631745633771transcriptional regulator IclR familyQuickGO ontologyBLASTP
174571417474771764ABC transporter nucleotide bindingATPase proteinQuickGO ontologyBLASTP
17479531748780828IS426 transposaseQuickGO ontologyBLASTP
17487771749166390IS426 transposaseQuickGO ontologyBLASTP
17492051749549345IS3 family transposaseQuickGO ontologyBLASTP
17495651750494930IS3 family transposaseQuickGO ontologyBLASTP
17504881750754267IS3 family transposaseQuickGO ontologyBLASTP
175105417526641611hypothetical proteinBLASTP
175297517540931119sugar acetylaseQuickGO ontologyBLASTP
175409317559461854hypothetical proteinBLASTP
17559461756866921glycosyltransferaseQuickGO ontologyBLASTP
175692117579971077sugar nucleotide epimerasedehydrataseQuickGO ontologyBLASTP
17583021758577276transposaseQuickGO ontologyBLASTP
175881417601001287glycosyltransferaseQuickGO ontologyBLASTP
17600971760906810glycosyltransferaseQuickGO ontologyBLASTP
17613311762212882glycosyltransferaseQuickGO ontologyBLASTP
17622991763165867glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
17631621764055894dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
176406017651181059dTDP-D-glucose-46-dehydrataseQuickGO ontologyBLASTP
17651181765687570dTDP-rhamnose-35-epimeraseQuickGO ontologyBLASTP
176583217678982067ATP-dependent DNA helicaseQuickGO ontologyBLASTP
17681651768902738ABC transporter nucleotide bindingATPase protein dipeptideQuickGO ontologyBLASTP
17688991769675777ABC transporter nucleotide bindingATPase protein dipeptideQuickGO ontologyBLASTP
17697311770630900ABC transporter membrane spanning protein dipeptideQuickGO ontologyBLASTP
177062717716551029ABC transporter membrane spanning protein dipeptideQuickGO ontologyBLASTP
17718621772575714transcriptional regulator GntR familyQuickGO ontologyBLASTP