Pre_GI Gene

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Host: NC_003063 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003063:304962 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
304127305026900hypothetical proteinBLASTP
304962305858897hypothetical proteinBLASTP
305855306592738hypothetical proteinBLASTP
3068053089252121hypothetical proteinBLASTP
309070309639570hypothetical proteinBLASTP
3096393106971059hypothetical proteinBLASTP
310702311595894hypothetical proteinBLASTP
311532312458927hypothetical proteinBLASTP
312545313426882hypothetical proteinBLASTP
3135813159442364hypothetical proteinBLASTP
3167613178371077hypothetical proteinBLASTP
317892318812921hypothetical proteinBLASTP
3188123206651854hypothetical proteinBLASTP
3206653217831119hypothetical proteinBLASTP
3220583237041647hypothetical proteinBLASTP
324004324270267hypothetical proteinBLASTP
324264325193930hypothetical proteinBLASTP
325209325517309hypothetical proteinBLASTP
325733325981249hypothetical proteinBLASTP
325978326805828hypothetical proteinBLASTP
3272813290441764hypothetical proteinBLASTP
329125329955831hypothetical proteinBLASTP
330010330819810hypothetical proteinBLASTP
330953331756804hypothetical proteinBLASTP
331789332778990hypothetical proteinBLASTP
332827333588762hypothetical proteinBLASTP
333597334283687hypothetical proteinBLASTP