Pre_GI: BLASTP Hits

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Query: NC_017319:192482:216594 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence

Start: 216594, End: 216782, Length: 189

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007607:87000:112011112011112199189Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF28e-30129
NC_007608:97092:121311121311121499189Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS600 ORF28e-30129
NC_010660:86445:901579015790975819Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS3 family element, transposase orfB1e-29128
NC_017328:335160:348267348267349085819Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF23e-26117
NC_004337:1065609:108111810811181081861744Shigella flexneri 2a str. 301, complete genomeIS600 ORF23e-26117
NC_004337:309833:325574325574326392819Shigella flexneri 2a str. 301, complete genomeIS600 ORF23e-26117
NC_004337:309833:311782311782312600819Shigella flexneri 2a str. 301, complete genomeIS600 ORF23e-26117
NC_017319:155958:167525167525168343819Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF23e-26117
NC_011750:1565000:156708815670881567906819Escherichia coli IAI39 chromosome, complete genometransposase ORF B, IS6003e-26117
NC_011750:1094000:109861110986111099429819Escherichia coli IAI39 chromosome, complete genometransposase ORF B, IS6003e-26117
NC_011750:4947500:496193449619344962752819Escherichia coli IAI39 chromosome, complete genometransposase ORF B, IS6003e-26117
NC_004851:191709:196725196725197546822Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence3e-26117
NC_004851:191709:206328206328207146819Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS600 ORF23e-26117
NC_010658:1933605:195110819511081951926819Shigella boydii CDC 3083-94, complete genomeISSd1, transposase orfB3e-26117
NC_017328:4417000:443416444341644434982819Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF23e-26117
NC_004431:3409389:342593134259313426749819Escherichia coli CFT073, complete genomeTransposase insF for insertion sequence IS3A/B/C/D/E/fA2e-26117
NC_017328:1075535:110030311003031101121819Shigella flexneri 2002017 chromosome, complete genomeISSd1, transposase orfA/B, fusion2e-26117
NC_013361:1754346:176089517608951761713819Escherichia coli O26:H11 str. 11368 chromosome, complete genome2e-26117
NC_012967:4473368:449281844928184493636819Escherichia coli B str. REL606 chromosome, complete genomeIS600 ORF2-like protein2e-26117
NC_012947:3917619:392047239204723921290819Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeIntegrase catalytic region2e-26117
CP002797:4603787:464102846410284641846819Escherichia coli NA114, complete genomePutative transposase2e-26117
NC_013361:1284579:130535013053501306168819Escherichia coli O26:H11 str. 11368 chromosome, complete genomeIS600 transposase Orf22e-26117
NC_013008:1307392:132863913286391329457819Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase ISSd12e-26117
NC_011353:1307106:132835313283531329171819Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISSd1, transposase orfB2e-26117
NC_002655:1448605:146853914685391469357819Escherichia coli O157:H7 EDL933, complete genomeunknown in IS6002e-26117
NC_002695:1364833:138476713847671385585819Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase2e-26117
NC_002655:1053082:107293210729321073750819Escherichia coli O157:H7 EDL933, complete genomeunknown in IS6002e-26117
NC_004337:2185282:220413122041312204949819Shigella flexneri 2a str. 301, complete genomeIS600 ORF29e-26115
NC_017328:2090679:210447321044732105291819Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein9e-26115
NC_004337:2035945:2050214205021420512481035Shigella flexneri 2a str. 301, complete genomeIS600 ORF26e-26115
NC_004337:3590323:385770838577083858526819Shigella flexneri 2a str. 301, complete genomeIS600 ORF22e-25114
NC_017319:192482:206211206211207029819Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF22e-25114
NC_017328:2225418:224422722442272245045819Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF22e-25114
NC_004337:309833:316385316385317203819Shigella flexneri 2a str. 301, complete genomeIS600 ORF22e-25114
NC_004337:3590323:391180839118083912626819Shigella flexneri 2a str. 301, complete genomeIS600 ORF22e-25114
NC_004337:309833:330404330404331222819Shigella flexneri 2a str. 301, complete genomeIS600 ORF22e-25114
NC_017319:192482:196656196656197474819Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS600 ORF22e-25114
NC_017328:3935185:393746739374673938285819Shigella flexneri 2002017 chromosome, complete genomeIS600 orfB2e-25114
NC_011745:1287714:128771412877141288532819Escherichia coli ED1a chromosome, complete genometransposase ORF B, IS6002e-25114
NC_009254:637952:695656695656696507852Burkholderia vietnamiensis G4 chromosome 3, complete sequenceintegrase catalytic subunit5e-1063.2
NC_009255:1250939:128618812861881287039852Burkholderia vietnamiensis G4 chromosome 2, complete sequenceintegrase catalytic subunit5e-1063.2
NC_009255:916000:923757923757924608852Burkholderia vietnamiensis G4 chromosome 2, complete sequenceintegrase catalytic subunit5e-1063.2
NC_008752:725189:764199764199765056858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:725189:752579752579753436858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:558828:562904562904563761858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:3511006:352136735213673522224858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:725189:761576761576762433858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:3684739:370705437070543707911858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:2615360:261992426199242620781858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:2615360:262177726217772622634858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_008752:725189:765456765456766313858Acidovorax avenae subsp. citrulli AAC00-1, complete genomeIntegrase, catalytic region1e-0858.5
NC_007951:2087385:211587921158792116706828Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative IS1 transposase, InsB2e-0858.2
NC_014314:1230687:124573612457361246596861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:1485500:149904714990471499907861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:238043:266307266307267167861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:1485500:151614215161421517002861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:755166:762683762683763543861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:1485500:149438314943831495243861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.8
NC_014314:1485500:152869015286901529550861Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeIntegrase catalytic region2e-0857.4
NC_004741:310382:324718324718325431714Shigella flexneri 2a str. 2457T, complete genomeIS600 orfB6e-0856.2
NC_004741:310382:315635315635316348714Shigella flexneri 2a str. 2457T, complete genomeIS600 orfB6e-0856.2
NC_008258:1873805:188531218853121886025714Shigella flexneri 5 str. 8401, complete genomeIS600 ORF26e-0856.2
NC_007384:307013:316680316680317393714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_007385:157516:165512165512166225714Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF26e-0856.2
NC_007384:3741708:375527037552703755983714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_008258:1873805:188146918814691882182714Shigella flexneri 5 str. 8401, complete genomeIS600 ORF26e-0856.2
NC_007606:1209132:122664712266471227360714Shigella dysenteriae Sd197, complete genomeIS600 ORF26e-0856.2
NC_004741:2593012:259463025946302595343714Shigella flexneri 2a str. 2457T, complete genomeIS600 orfB6e-0856.2
NC_008258:2045000:205753920575392058252714Shigella flexneri 5 str. 8401, complete genomeIS600 ORF26e-0856.2
NC_004741:4364235:438292043829204383633714Shigella flexneri 2a str. 2457T, complete genomeIS600 orfB6e-0856.2
NC_008258:2190635:220577822057782206491714Shigella flexneri 5 str. 8401, complete genomeIS600 ORF26e-0856.2
NC_007613:1038000:103859910385991039312714Shigella boydii Sb227, complete genomeIS600 ORF26e-0856.2
NC_016822:1304398:131743013174301318053624Shigella sonnei 53G, complete genomeintegrase6e-0856.2
NC_007606:1515403:153269615326961533409714Shigella dysenteriae Sd197, complete genomeIS600 ORF26e-0856.2
NC_016822:3420826:343561234356123436172561Shigella sonnei 53G, complete genomeintegrase7e-0856.2
NC_007384:1320287:134361213436121344325714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_007385:157516:174125174125174838714Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS600 ORF26e-0856.2
NC_007384:2007467:202455520245552025268714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_008258:1076922:109926510992651099903639Shigella flexneri 5 str. 8401, complete genomeIS600 ORF25e-0856.2
NC_007607:87000:923709237093083714Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF26e-0856.2
NC_004741:2169877:218498421849842185697714Shigella flexneri 2a str. 2457T, complete genome6e-0856.2
NC_016822:3420826:342689634268963427609714Shigella sonnei 53G, complete genomehypothetical protein6e-0856.2
NC_016822:267758:284840284840285553714Shigella sonnei 53G, complete genomehypothetical protein6e-0856.2
NC_007606:4182188:420070942007094201422714Shigella dysenteriae Sd197, complete genomeIS600 ORF26e-0856.2
NC_007384:1320287:132202113220211322734714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_007606:4182188:418409841840984184811714Shigella dysenteriae Sd197, complete genomeIS600 ORF26e-0856.2
NC_016822:3946500:395327339532733953986714Shigella sonnei 53G, complete genomeIS600 ORF26e-0856.2
NC_007384:2007467:201299420129942013707714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_007384:1320287:133458913345891335302714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_007384:307013:322139322139322852714Shigella sonnei Ss046, complete genomeIS600 ORF26e-0856.2
NC_008258:1934479:193960019396001940313714Shigella flexneri 5 str. 8401, complete genomeIS600 ORF26e-0856.2
NC_016822:1304398:132645313264531327166714Shigella sonnei 53G, complete genomeIS600 ORF26e-0856.2
NC_016822:2678691:269934126993412700054714Shigella sonnei 53G, complete genomeIS600 ORF26e-0856.2
NC_016822:2940000:294019729401972940910714Shigella sonnei 53G, complete genomeIS600 ORF26e-0856.2
NC_007607:87000:119550119550120263714Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS600 ORF29e-0855.5
NC_009328:814530:828428828428828997570Geobacillus thermodenitrificans NG80-2 chromosome, complete genometransposase1e-0755.5
NC_020126:8512908:852074985207498521411663Myxococcus stipitatus DSM 14675, complete genomeIS5 family transposase orfB2e-0754.3
NC_014168:3013697:301968630196863020555870Segniliparus rotundus DSM 44985 chromosome, complete genomeintegrase catalytic subunit3e-0753.9
NC_011567:2405000:242213724221372422967831Anoxybacillus flavithermus WK1, complete genomeTransposase3e-0753.9
NC_011567:2405000:240566024056602406490831Anoxybacillus flavithermus WK1, complete genomeTransposase3e-0753.9
NC_015660:487506:526841526841527698858Geobacillus thermoglucosidasius C56-YS93 chromosome, completeintegrase catalytic subunit4e-0753.5
NC_020829:940692:974824974824975477654Pseudomonas denitrificans ATCC 13867, complete genometransposase InsF for insertion sequence IS3A/B/C/D/E/fA8e-0752.4
NC_011992:3550566:355467035546703555512843Acidovorax ebreus TPSY, complete genomeIntegrase catalytic region2e-0651.6
NC_011992:2279752:231060923106092311451843Acidovorax ebreus TPSY, complete genomeIntegrase catalytic region2e-0651.6
NC_014650:1862165:187360618736061874436831Geobacillus sp. Y4.1MC1 chromosome, complete genomeIntegrase catalytic subunit2e-0651.6
NC_009328:1651812:167829616782961679063768Geobacillus thermodenitrificans NG80-2 chromosome, complete genometransposase3e-0650.4
NC_007644:1638083:164647016464701647344875Moorella thermoacetica ATCC 39073, complete genome5e-0650.1
NC_011753:2018500:201954420195442020431888Vibrio splendidus LGP32 chromosome 1, complete genomeTransposase (orfB) of insertion sequence ISVisp1 ; IS3 family subgroup IS34e-0650.1
NC_010511:6067000:614046461404646140832369Methylobacterium sp. 4-46 chromosome, complete genomeintegrase catalytic subunit4e-0650.1
NC_014640:4031336:405014940501494051003855Achromobacter xylosoxidans A8 chromosome, complete genomeintegrase4e-0650.1
NC_014640:4532095:454425945442594545113855Achromobacter xylosoxidans A8 chromosome, complete genomeintegrase4e-0650.1
NC_014151:856354:867137867137868012876Cellulomonas flavigena DSM 20109 chromosome, complete genomeIntegrase catalytic region4e-0650.1
NC_009656:6224221:622870562287056229571867Pseudomonas aeruginosa PA7 chromosome, complete genometransposase InsF for insertion sequence IS3A/B/C/D/E/fA5e-0649.7
NC_008148:2231045:223493422349342235813880Rubrobacter xylanophilus DSM 9941, complete genome6e-0649.7
NC_009328:814530:824496824496825326831Geobacillus thermodenitrificans NG80-2 chromosome, complete genometransposase8e-0649.3