Pre_GI Gene

Some Help

Host: NC_008148 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:2231045 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
223104522321811137phage integraseQuickGO ontologyBLASTP
22324112232824414hypothetical protein
22328212233258438hypothetical protein
22335642233962399hypothetical protein
22339622234234273zinc finger SWIM-typeQuickGO ontologyBLASTP
22349342235813880BLASTP
223591122370231113Integrase catalytic regionQuickGO ontologyBLASTP
22370202237343324transposase IS3IS911QuickGO ontologyBLASTP
22374122237591180BLASTP
22376472237991345hypothetical protein
22382252238920696HhH-GPDQuickGO ontologyBLASTP
223901522406401626hypothetical protein
22406592241430772BLASTP
224200522432221218DNA cytosine-5--methyltransferaseQuickGO ontologyBLASTP
224321922448531635hypothetical proteinBLASTP
22452002245460261transcriptional regulator XRE familyQuickGO ontology
22454882245832345hypothetical protein
22470642247357294Antibiotic biosynthesis monooxygenaseQuickGO ontologyBLASTP
22473612247908548
22478962248858963fumarylacetoacetate FAA hydrolaseQuickGO ontologyBLASTP
22488972249858962BLASTP
224989022509091020Aminocarboxymuconate-semialdehyde decarboxylaseQuickGO ontologyBLASTP
225090622519551050fumarylacetoacetate FAA hydrolaseQuickGO ontologyBLASTP
225197522531141140monooxygenase FAD-binding proteinQuickGO ontologyBLASTP
225312622541601035Catechol 23-dioxygenaseQuickGO ontologyBLASTP
22542932255198906transcriptional regulator LysR familyQuickGO ontologyBLASTP
22553332256121789putative cyclaseQuickGO ontologyBLASTP
22565702256875306
22568762257070195BLASTP
22571302257548419BLASTP
22577002258131432Cupin 2 conserved barrelQuickGO ontologyBLASTP
22582142258432219BLASTP
225932522603321008proline racemaseQuickGO ontologyBLASTP
22603252261310986BLASTP
226151822635111994BLASTP
226361722656111995NADHflavin oxidoreductaseNADH oxidaseQuickGO ontologyBLASTP
226563922669791341General substrate transporterQuickGO ontologyBLASTP
226721622685021287FAD dependent oxidoreductaseQuickGO ontologyBLASTP
226851922698921374aldehyde dehydrogenaseQuickGO ontologyBLASTP
22699372270821885dihydrodipicolinate synthaseQuickGO ontologyBLASTP
227083422718471014proline racemaseQuickGO ontologyBLASTP
22718342272532699transcriptional regulator GntR familyQuickGO ontologyBLASTP
22730382273295258hypothetical protein
22733032274277975nuclease SNase-likeQuickGO ontologyBLASTP
22742872274661375hypothetical protein
22749732275233261hypothetical protein
22752302275511282hypothetical protein
22755082275813306hypothetical protein
227585222780772226hypothetical proteinBLASTP
22788492279184336hypothetical protein
227919022805481359hypothetical protein
22808012281133333hypothetical protein
228175822834011644thiamine pyrophosphate enzyme-like TPP binding regionQuickGO ontologyBLASTP
22834142284196783putative cyclaseQuickGO ontologyBLASTP
22841932285149957hypothetical protein