Pre_GI: BLASTP Hits

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Query: NC_017265:2306500:2309334 Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,

Start: 2309334, End: 2309540, Length: 207

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008149:2517538:252431525243152524521207Yersinia pestis Nepal516, complete genomehypothetical protein1e-34145
NC_014306:3102000:310889431088943109646753Erwinia billingiae Eb661, complete genomeTransposase2e-30131
NC_014306:3524980:357866035786603579487828Erwinia billingiae Eb661, complete genomeTransposase2e-30130
NC_014306:4901390:491572149157214916548828Erwinia billingiae Eb661, complete genomeTransposase2e-30130
NC_008253:3122148:315436331543633155202840Escherichia coli 536, complete genomeputative transposase (orfB)2e-22104
NC_008253:3941938:397741139774113978250840Escherichia coli 536, complete genomeputative transposase2e-22104
NC_008253:2828573:284281728428172843656840Escherichia coli 536, complete genomeputative transposase protein2e-22104
NC_009999:38832:604726047261284813Shewanella baltica OS195 plasmid pS19502, complete sequenceIntegrase catalytic region2e-22104
NC_009997:2699644:270474527047452705557813Shewanella baltica OS195, complete genomeIntegrase catalytic region2e-22104
NC_009997:5188221:521475952147595215571813Shewanella baltica OS195, complete genomeIntegrase catalytic region2e-22104
NC_008345:3756977:376330737633073764119813Shewanella frigidimarina NCIMB 400, complete genomeIntegrase, catalytic region2e-22104
CU928145:3360967:336554733655473365963417Escherichia coli 55989 chromosome, complete genomefragment of transposase ORF B, IS911 (partial)5e-22103
NC_011748:3360967:336554733655473365963417Escherichia coli 55989, complete genome5e-22103
NC_017270:1755552:1775267177526717762801014Vibrio cholerae LMA3984-4 chromosome chromosome I, completetransposase OrfAB subunit B3e-22103
NC_015633:2565753:257525125752512576123873Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase3e-22103
NC_007606:4182188:418527041852704186106837Shigella dysenteriae Sd197, complete genomeIS911 ORF22e-22103
NC_012583:440420:464457464457465329873Vibrio cholerae O395 chromosome chromosome II, complete sequenceISVch4 transposase, OrfB6e-22102
NC_012582:2013515:202204120220412022913873Vibrio cholerae O395 chromosome chromosome I, complete sequenceISVch4 transposase, OrfB6e-22102
NC_012580:353273:369634369634370506873Vibrio cholerae M66-2 chromosome II, complete sequenceISVch4 transposase, OrfA6e-22102
NC_012578:1838470:188465218846521885524873Vibrio cholerae M66-2 chromosome I, complete sequenceISVch4 transposase, OrfB6e-22102
NC_009457:1444449:149062214906221491494873Vibrio cholerae O395 chromosome 2, complete sequencetransposase OrfAB subunit B6e-22102
NC_009456:787322:798613798613799485873Vibrio cholerae O395 chromosome 1, complete sequencetransposase OrfAB subunit B6e-22102
NC_009456:787322:794496794496795368873Vibrio cholerae O395 chromosome 1, complete sequencetransposase OrfAB subunit B6e-22102
NC_002505:238569:262667262667263539873Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetransposase OrfAB, subunit B6e-22102
NC_002506:370629:435760435760436632873Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetransposase OrfAB, subunit B6e-22102
NC_002506:324552:357184357184358056873Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetransposase OrfAB, subunit B6e-22102
NC_002505:1931750:193751919375191938391873Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetransposase OrfAB, subunit B6e-22102
NC_012667:931390:930521930521931393873Vibrio cholerae MJ-1236 chromosome 2, complete genometransposase OrfAB subunit B6e-22102
NC_012667:931390:100366410036641004536873Vibrio cholerae MJ-1236 chromosome 2, complete genometransposase OrfAB subunit B6e-22102
NC_017270:220282:245656245656246528873Vibrio cholerae LMA3984-4 chromosome chromosome I, completetransposase OrfAB subunit B6e-22102
NC_016945:370471:435579435579436451873Vibrio cholerae IEC224 chromosome II, complete sequencetransposase OrfAB subunit B6e-22102
NC_016945:324519:357002357002357874873Vibrio cholerae IEC224 chromosome II, complete sequencetransposase OrfAB subunit B6e-22102
NC_016944:238580:262678262678263550873Vibrio cholerae IEC224 chromosome I, complete sequencetransposase OrfAB subunit B6e-22102
NC_016944:1978058:198382719838271984699873Vibrio cholerae IEC224 chromosome I, complete sequencetransposase OrfAB subunit B6e-22102
NC_016446:49618:822518225183123873Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completetransposase OrfAB, subunit B6e-22102
NC_016446:119914:136301136301137173873Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completetransposase OrfAB, subunit B6e-22102
NC_016445:2938887:295329229532922954164873Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit B6e-22102
NC_016445:1363831:140892014089201409792873Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit B6e-22102
NC_016445:1027143:105565610556561056528873Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit B6e-22102
NC_012668:1688500:170911617091161709988873Vibrio cholerae MJ-1236 chromosome 1, complete sequencetransposase OrfAB subunit B6e-22102
NC_007606:1209132:121941512194151219936522Shigella dysenteriae Sd197, complete genomeIS911 ORF21e-21101
NC_012125:2826624:284390628439062844745840Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-21101
NC_006905:2857699:286203628620362862875840Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-21101
NC_017328:4417000:443811544381154438474360Shigella flexneri 2002017 chromosome, complete genomeIS911 orfA2e-21101
NC_017328:3088907:311730431173043117663360Shigella flexneri 2002017 chromosome, complete genomeIS911 orfA2e-21101
NC_008258:1873805:187616618761661876732567Shigella flexneri 5 str. 8401, complete genomeIS911 ORF21e-21101
NC_004741:4364235:438633343863334386959627Shigella flexneri 2a str. 2457T, complete genomeIS911 orfB1e-21101
NC_004851:191709:217155217155217994840Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS911 ORF21e-21101
NC_004337:4374500:439392443939244394763840Shigella flexneri 2a str. 301, complete genomeIS911 ORF21e-21101
NC_016822:1431200:147317514731751474014840Shigella sonnei 53G, complete genomeIS911 orfA1e-21101
NC_007384:4095016:411949441194944120333840Shigella sonnei Ss046, complete genomeIS911 ORF21e-21101
NC_007608:97092:122280122280123119840Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS911 ORF21e-21101
NC_010658:2529033:253274425327442533583840Shigella boydii CDC 3083-94, complete genome1e-21101
NC_012214:1355500:136859113685911369430840Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probable orf B3e-21100
NC_012214:1117325:112574011257401126579840Erwinia pyrifoliae Ep1/96, complete genomeTransposase3e-21100
NC_007613:3470314:349641334964133497252840Shigella boydii Sb227, complete genomeIS911 ORF24e-21100
NC_007613:761234:765010765010765849840Shigella boydii Sb227, complete genomeIS911 ORF24e-21100
NC_007613:4403070:440628744062874407126840Shigella boydii Sb227, complete genomeIS911 ORF24e-21100
NC_007613:1038000:104821010482101049049840Shigella boydii Sb227, complete genomeIS911 ORF24e-21100
NC_012214:2805297:281776628177662818605840Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable fragment3e-21100
NC_012214:1212616:122223912222391223078840Erwinia pyrifoliae Ep1/96, complete genometransposase, orf B3e-21100
NC_012967:4473368:448941744894174490256840Escherichia coli B str. REL606 chromosome, complete genomeIS911 orfA-like protein2e-21100
NC_014121:4299500:432214443221444322983840Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfA2e-21100
NC_014121:3627588:366581136658113666650840Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfA2e-21100
NC_014121:489500:515489515489516328840Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeIS911 orfA2e-21100
NC_014121:2330451:233765623376562338495840Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfA2e-21100
NC_011566:4709672:471855047185504719227678Shewanella piezotolerans WP3, complete genomeISSwp4, transposase OrfB2e-21100
NC_007613:2376974:238067623806762381197522Shigella boydii Sb227, complete genomeIS911 ORF25e-2199.8
NC_011740:2859933:286568928656892866528840Escherichia fergusonii ATCC 35469, complete genometransposase ORF B, IS9119e-2199
NC_000913:4494773:450757445075744507816243Escherichia coli K12, complete genome2e-1994
AC_000091:4501430:451423145142314514473243Escherichia coli W3110 DNA, complete genome2e-1994
NC_009783:1665610:168709216870921687853762Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein1e-1891.7
NC_010660:33109:418514185142672822Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-1891.7
NC_015963:117178:146973146973147812840Enterobacter asburiae LF7a plasmid pENTAS01, complete sequenceintegrase catalytic subunit4e-1890.1
NC_008253:4735418:475936747593674759609243Escherichia coli 536, complete genomeputative transposase4e-1890.1
NC_008739:41793:599745997460804831Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequenceIntegrase, catalytic region2e-1684.7
NC_014800:329861:351582351582352412831Pseudoalteromonas sp. SM9913 chromosome chromosome II, completeintegrase catalytic subunit5e-1683.2
NC_008740:443274:462896462896463726831Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region4e-1683.2
NC_013941:1613595:1617153161715316181991047Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeIS911 transposase orfB1e-1375.1
NC_010498:1094000:111558611155861116332747Escherichia coli SMS-3-5, complete genomeIS911 transposase orfB2e-1374.7
NC_013941:4470932:447284444728444473497654Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase2e-1374.7
NC_020063:4127161:413268541326854133437753Enterobacteriaceae bacterium strain FGI 57, complete genometransposase2e-1374.3
AP010958:3669500:371558637155863716332747Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS602 transposase OrfB2e-1374.3
NC_011748:2973968:299215629921562992902747Escherichia coli 55989, complete genome2e-1374.3
NC_010488:48868:677876778768533747Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequenceintegrase core subunit2e-1374.3
CU928145:2973968:299215629921562992902747Escherichia coli 55989 chromosome, complete genomefragment of transposase ORF B, IS3 family (partial)2e-1374.3
NC_013353:3669500:371558637155863716332747Escherichia coli O103:H2 str. 12009, complete genomeIS602 transposase OrfB2e-1374.3
NC_013364:3701895:375732137573213758067747Escherichia coli O111:H- str. 11128, complete genomeputative IS602 transposase OrfB2e-1374.3
NC_011415:1472500:149118014911801491833654Escherichia coli SE11 chromosome, complete genometransposase2e-1374.3
NC_010067:2529750:254182925418292542269441Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-1372.8
NC_010498:301000:315387315387316133747Escherichia coli SMS-3-5, complete genomeIS911 transposase orfB8e-1372.4
NC_011750:1094000:109424910942491094689441Escherichia coli IAI39 chromosome, complete genometransposase ORF B (fragment), IS3 family1e-1272
NC_011750:1565000:158410915841091584549441Escherichia coli IAI39 chromosome, complete genometransposase ORF B (fragment), IS3 family1e-1272
NC_011747:115864:126687126687126860174Escherichia coli S88 plasmid pECOS88, complete sequence2e-1271.2
NC_011415:4767892:478606547860654786625561Escherichia coli SE11 chromosome, complete genometransposase2e-1167.8
NC_016614:1543333:155399315539931554502510Vibrio sp. EJY3 chromosome 2, complete sequenceputative integrase2e-0961.2
NC_017506:93494:131940131940132773834Marinobacter adhaerens HP15 chromosome, complete genometransposase OrfAB subunit B5e-0959.7
NC_005773:4282840:428921242892124290033822Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfB1e-0858.5
NC_005773:5636606:565852456585245659195672Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfB2e-0858.2
NC_017986:4931104:495732349573234958132810Pseudomonas putida ND6 chromosome, complete genomeputative integrase2e-0857.8
NC_017986:4790482:483129048312904832099810Pseudomonas putida ND6 chromosome, complete genomeputative integrase2e-0857.8
NC_005773:3220500:323888632388863239704819Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfB2e-0857.8
NC_003295:2507850:251422225142222515076855Ralstonia solanacearum GMI1000, complete genomePUTATIVE TRANSPOSASE PROTEIN3e-0857
NC_014311:1635408:164212316421231642863741Ralstonia solanacearum PSI07 chromosome, complete genometransposase, integrase domain6e-0856.2
NC_002947:4994335:501454150145415015350810Pseudomonas putida KT2440, complete genometransposase, OrfB8e-0855.8
NC_008543:61000:714477144771734288Burkholderia cenocepacia HI2424 chromosome 2, complete sequence1e-0755.5
NC_011750:3545466:355071535507153551083369Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-0755.5
NC_002516:1031386:106120710612071062034828Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-0755.1
NC_008463:282565:298872298872299717846Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-0755.1
NC_009656:6224221:622989262298926230710819Pseudomonas aeruginosa PA7 chromosome, complete genomeISSod1 transposase1e-0755.1
NC_009656:4527457:456234445623444563255912Pseudomonas aeruginosa PA7 chromosome, complete genomeISPsy24 transposase OrfB1e-0755.1
NC_008253:4735418:477247347724734772841369Escherichia coli 536, complete genomehypothetical transposase-like protein1e-0755.1
NC_007650:84140:104684104684104998315Burkholderia thailandensis E264 chromosome II, complete sequenceintegrase, putative1e-0755.1
NC_007651:3656433:367832236783223678636315Burkholderia thailandensis E264 chromosome I, complete sequencetransposase, truncation1e-0755.1
NC_009654:1729159:173373417337341734543810Marinomonas sp. MWYL1, complete genomeintegrase catalytic region1e-0755.1
NC_011770:1811874:182096418209641821785822Pseudomonas aeruginosa LESB58, complete genomeputative transposase2e-0754.7
NC_002516:2113186:211892621189262119747822Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-0754.7
NC_015733:2658337:268339926833992684070672Pseudomonas putida S16 chromosome, complete genomeISPsy24, transposase OrfB2e-0754.7
NC_018080:1834754:184972818497281850555828Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-0754.7
NC_018080:2288700:229811522981152298942828Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-0754.7
NC_018080:2288700:230651123065112307338828Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-0754.7
NC_018080:4280401:429234842923484293175828Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-0754.7
NC_018080:5070687:508114650811465081973828Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-0754.7
NC_008463:4566976:458814645881464588991846Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible transposase2e-0754.7
NC_009434:2006500:201434420143442015165822Pseudomonas stutzeri A1501, complete genomeISPsy12, transposase OrfB2e-0754.7
NC_010067:2488141:250476825047682505355588Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0754.3
NC_009656:2512733:253838825383882539215828Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-0754.3
NC_009656:2422083:242958124295812430408828Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein2e-0754.3
NC_015460:418826:439496439496439909414Gallibacterium anatis UMN179 chromosome, complete genomeconserved hypothetical protein, integrase core domain protein5e-0649.7