Pre_GI Gene

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Host: NC_008543 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008543:61000 Burkholderia cenocepacia HI2424 chromosome 2, complete sequence

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
6112661530405protein of unknown function DUF1486QuickGO ontologyBLASTP
6156462529966Alphabeta hydrolase fold-3 domain proteinQuickGO ontologyBLASTP
6269263609918transcriptional regulator LysR familyQuickGO ontologyBLASTP
6374764511765short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
6459565302708Pirin domain protein domain proteinQuickGO ontologyBLASTP
6567065927258hypothetical proteinBLASTP
6606567009945transcriptional regulator LysR familyQuickGO ontologyBLASTP
6719168114924dihydrodipicolinate synthetaseQuickGO ontologyBLASTP
68351697931443major facilitator superfamily MFS_1QuickGO ontologyBLASTP
69984710571074porin Gram-negative typeQuickGO ontologyBLASTP
7128971417129transcriptional regulator AraC familyQuickGO ontologyBLASTP
71783731801398Integrase catalytic regionQuickGO ontologyBLASTP
7333473708375putative transposase proteinQuickGO ontologyBLASTP
7376274070309transposase IS3IS911 family proteinQuickGO ontologyBLASTP
7410974234126hypothetical proteinBLASTP
7444175178738protein of unknown function DUF81QuickGO ontologyBLASTP
7545476029576protein of unknown function DUF1130QuickGO ontologyBLASTP
7602676253228hypothetical proteinBLASTP
7644476779336hypothetical protein
7686677222357hypothetical protein
77415785871173porin Gram-negative typeQuickGO ontologyBLASTP
78662800111350major facilitator superfamily MFS_1QuickGO ontologyBLASTP
8033580619285hypothetical protein