Pre_GI Gene

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Host: NC_012582 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012582:2013515 Vibrio cholerae O395 chromosome chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
20135152014480966C4-dicarboxylate-binding periplasmic proteinQuickGO ontologyBLASTP
20145112014804294hypothetical proteinBLASTP
20146952015417723Putative N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
20154052016268864ROK family proteinQuickGO ontologyBLASTP
201627220174081137N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP
201775320201762424neuraminidaseQuickGO ontologyBLASTP
20203232020529207transcriptional regulatorQuickGO ontologyBLASTP
20206432021119477putative DNA repair protein RadCQuickGO ontologyBLASTP
20211162021253138hypothetical proteinBLASTP
20213492022044696hypothetical proteinBLASTP
20220412022913873ISVch4 transposase OrfBQuickGO ontologyBLASTP
20229102023254345ISVch4 transposase OrfAQuickGO ontologyBLASTP
202326120243011041Mu-like prophage FluMu protein gp42QuickGO ontologyBLASTP
20244362024795360Mu-like prophage FluMu protein gp41QuickGO ontologyBLASTP
20248442025221378hypothetical proteinBLASTP
20252762025854579hypothetical proteinBLASTP
20258732026193321putative transcriptional regulatorQuickGO ontologyBLASTP
20261802026554375middle operon regulator-related proteinQuickGO ontologyBLASTP
20269562027222267hypothetical proteinBLASTP
20273642027825462hypothetical proteinBLASTP
202782820289791152eha protein General secretion pathway protein AQuickGO ontologyBLASTP
202890920306661758hypothetical proteinBLASTP
20306732031644972hypothetical proteinBLASTP
20323082032544237hypothetical proteinBLASTP
20326342033095462hypothetical proteinBLASTP
20333222033636315hypothetical proteinBLASTP
20336872034133447hypothetical proteinBLASTP
20342402035226987hypothetical proteinBLASTP
20361932037038846hypothetical proteinBLASTP