Pre_GI Gene

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Host: NC_011750 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011750:3545466 Escherichia coli IAI39 chromosome, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli IAI39 is a serotype O7:K1 strain from a urinary tract infection. Isolated from the urine of a patient with pyelonephritis in the 1980s in France. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3545466354554176tRNA-PheQuickGO ontologyBLASTP
354573935470041266Prophage integraseQuickGO ontologyBLASTP
354723035483031074SHI-2 pathogenicity island proteinQuickGO ontologyBLASTP
35488333549108276IS1 repressor protein InsAQuickGO ontologyBLASTP
35490273549530504IS1 transposase InsABQuickGO ontologyBLASTP
35499973550548552putative HTH-type transcriptional regulatorQuickGO ontologyBLASTP
35507153551083369hypothetical proteinBLASTP
35515533551804252putative transposase ORF A IS3 familyQuickGO ontologyBLASTP
35530583553591534fimbrial adapter PapFQuickGO ontologyBLASTP
35536363554175540fimbrial tip protein PapEQuickGO ontologyBLASTP
35542123554715504IS1 transposase InsABQuickGO ontologyBLASTP
35546343554909276IS1 repressor protein InsAQuickGO ontologyBLASTP
35564323556665234pap operon regulatory protein PapIQuickGO ontologyBLASTP
35568113557257447transposase ORF B fragment IS629QuickGO ontologyBLASTP
3557284355737087Intron_gpIIQuickGO ontologyBLASTP
355737435588971524Group II intron-encoded reverse transcriptasematuraseQuickGO ontologyBLASTP
35594893559779291transposase ORF B fragment IS629QuickGO ontologyBLASTP
35611153561915801transposase IstB IS21QuickGO ontologyBLASTP
35619553562104150transposase ORF B fragment IS629QuickGO ontologyBLASTP
35621043562430327transposase ORF A IS629QuickGO ontologyBLASTP