Pre_GI Gene

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Host: NC_016944 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016944:238580 Vibrio cholerae IEC224 chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
238580239362783mannosyltransferase OCH1-like enzymeQuickGO ontologyBLASTP
2393652404141050hypothetical proteinBLASTP
2404112414481038ADP-heptose--LPS-heptosyltransferase IIQuickGO ontologyBLASTP
2414482426471200O-antigen ligaseQuickGO ontologyBLASTP
242649243209561hexapaptide repeat-containing transferaseQuickGO ontologyBLASTP
2432232449951773hypothetical proteinBLASTP
245154246098945ADP-L-glycero-D-manno-heptose-6-epimeraseQuickGO ontologyBLASTP
2466512479371287mannose-1-phosphate guanylyltransferaseQuickGO ontologyBLASTP
2479402493311392phosphomannomutaseQuickGO ontologyBLASTP
2493342504551122GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
2504662515691104perosamine synthaseQuickGO ontologyBLASTP
2515752529571383rfbG proteinQuickGO ontologyBLASTP
252929253723795lipopolysaccharideO-antigen transport proteinQuickGO ontologyBLASTP
253851254477627O-antigen export system ATP-binding proteinQuickGO ontologyBLASTP
254525254758234acyl carrier proteinQuickGO ontologyBLASTP
2547642561791416rfbL proteinQuickGO ontologyBLASTP
2562602573121053acetaldehyde dehydrogenaseQuickGO ontologyBLASTP
2573032597802478acyl protein synthaseacyl-CoA reductase RfbNQuickGO ontologyBLASTP
259850260416567galactoside O-acetyltransferaseQuickGO ontologyBLASTP
261725261931207transposaseQuickGO ontologyBLASTP
262067262330264RfbT-likeproteinQuickGO ontologyBLASTP
262337262681345transposase OrfAB subunit AQuickGO ontologyBLASTP
262678263550873transposase OrfAB subunit BQuickGO ontologyBLASTP
263574264230657rfbT proteinQuickGO ontologyBLASTP
2642652653771113lipopolysaccharide biosynthesis protein RfbVQuickGO ontologyBLASTP
2653852672501866mannosyl-transferaseQuickGO ontologyBLASTP
267311267427117hypothetical proteinBLASTP
267403268374972UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
268382268936555lipid carrier UDP-N-acetylgalactosaminyltransferaseQuickGO ontologyBLASTP
2691302704461317metallo-beta-lactamase family protein RNA-specificQuickGO ontologyBLASTP
2707082719461239hypothetical proteinBLASTP
272001272573573uracil-DNA glycosylaseQuickGO ontologyBLASTP
272573273496924D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
273570274157588hypothetical proteinBLASTP