Pre_GI: BLASTN Hits

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Query: NC_008563:287136 Escherichia coli APEC O1, complete genome

Start: 287136, End: 305843, Length: 18708

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome011290BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome08661BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome07388BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome06558BLASTN svgBLASTP svg
NC_009800:289000*28900031038921390Escherichia coli HS, complete genome04865BLASTN svgBLASTP svg
NC_004741:310382*31038233778027399Shigella flexneri 2a str. 2457T, complete genome04712BLASTN svgBLASTP svg
NC_004337:309833*30983333864628814Shigella flexneri 2a str. 301, complete genome02403BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome01233BLASTN svgBLASTP svg
NC_013716:357928*35792840652048593Citrobacter rodentium ICC168, complete genome01176BLASTN svgBLASTP svg
NC_011083:374000*37400039609922100Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,01158BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str01126BLASTN svgBLASTP svg
NC_004631:2584244*2584244260559921356Salmonella enterica subsp. enterica serovar Typhi Ty2, complete01096BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete0934BLASTN svgBLASTP svg
NC_009648:293052*29305232674733696Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome0920BLASTN svgBLASTP svg
NC_021066:3028421*3028421305110422684Raoultella ornithinolytica B6, complete genome0684BLASTN svgBLASTP svg
NC_020260:3004500*3004500302796523466Cronobacter sakazakii Sp291, complete genome1e-140507BLASTN svgBLASTP svg
NC_013282:923500*92350094659923100Cronobacter turicensis, complete genome7e-136492BLASTN svgBLASTP svg
NC_003197:36743036743038660919180Salmonella typhimurium LT2, complete genome8e-111408BLASTN svgBLASTP svg
NC_012917:3684840*3684840370871823879Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-90341BLASTN svgBLASTP svg
NC_013421:3752619*3752619377249719879Pectobacterium wasabiae WPP163, complete genome2e-90341BLASTN svgBLASTP svg
NC_020211:996497*996497103223335737Serratia marcescens WW4, complete genome5e-75289BLASTN svgBLASTP svg
NC_004547:3866439*3866439389314026702Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-66262BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome1e-60242BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome2e-53218BLASTN svgBLASTP svg
NC_014500:3744705*3744705376630221598Dickeya dadantii 3937 chromosome, complete genome3e-33151BLASTN svgBLASTP svg
NC_012559:1663214*1663214168255819345Laribacter hongkongensis HLHK9, complete genome2e-28135BLASTN svgBLASTP svg
NC_010465:35970003597000361924222243Yersinia pseudotuberculosis YPIII, complete genome3e-27131BLASTN svgBLASTP svg
NC_003143:35834683583468360515221685Yersinia pestis CO92, complete genome7e-25123BLASTN svgBLASTP svg
NC_004088:10754541075454109916823715Yersinia pestis KIM, complete genome7e-25123BLASTN svgBLASTP svg
NC_005810:75434075434077859924260Yersinia pestis biovar Microtus str. 91001, complete genome7e-25123BLASTN svgBLASTP svg
NC_008149:10024531002453102731424862Yersinia pestis Nepal516, complete genome7e-25123BLASTN svgBLASTP svg
NC_008150:30150003015000303859923600Yersinia pestis Antiqua, complete genome7e-25123BLASTN svgBLASTP svg
NC_010159:35023503502350352559923250Yersinia pestis Angola, complete genome4e-23117BLASTN svgBLASTP svg
NC_010634:10564411056441108059924159Yersinia pseudotuberculosis PB1/+, complete genome2e-22115BLASTN svgBLASTP svg
NC_006155:10742981074298109520420907Yersinia pseudotuberculosis IP 32953, complete genome2e-22115BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome3e-18101BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_014008:3296708*3296708332809931392Coraliomargarita akajimensis DSM 45221 chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1695.6BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_006511:24677632467763249158023818Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-1693.7BLASTN svgBLASTP svg
NC_006905:40115440115443134930196Salmonella enterica subsp. enterica serovar Choleraesuis str6e-1693.7BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_009800:32011532011533924219128Escherichia coli HS, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete6e-1693.7BLASTN svgBLASTP svg
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_009778:29512072951207297908827882Enterobacter sakazakii ATCC BAA-894, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_010943:1379707*1379707140629326587Stenotrophomonas maltophilia K279a, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_015572:4618467*4618467464627927813Methylomonas methanica MC09 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002695:2854629*2854629287509920471Escherichia coli O157:H7 str. Sakai, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_002655:2925787*2925787294624420458Escherichia coli O157:H7 EDL933, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome9e-1279.8BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010498:41669034166903419347126569Escherichia coli SMS-3-5, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_011750:44905734490573451714226570Escherichia coli IAI39 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome2e-0971.9BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome2e-0971.9BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome2e-0971.9BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome2e-0971.9BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008027:4953432*4953432497941825987Pseudomonas entomophila L48, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015733:715947*71594774917233226Pseudomonas putida S16 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015563:3979500*3979500400273623237Delftia sp. Cs1-4 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015311:1612366*1612366164599633631Prevotella denticola F0289 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_010501:4989455*4989455501446425010Pseudomonas putida W619, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009512:755658*75565878272327066Pseudomonas putida F1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome2e-0971.9BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_008563:15054051505405154006134657Escherichia coli APEC O1, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014752:131994*13199415436422371Neisseria lactamica ST-640, complete genome9e-0969.9BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome4e-0867.9BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome4e-0867.9BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013740:15401*154013926023860Acidaminococcus fermentans DSM 20731, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002655:47479264747926477356525640Escherichia coli O157:H7 EDL933, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002695:46789454678945470459925655Escherichia coli O157:H7 str. Sakai, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014006:924417*92441794759923183Sphingobium japonicum UT26S chromosome 1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015062:999699996912011920151Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence1e-0765.9BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009434:1580205*1580205160112420920Pseudomonas stutzeri A1501, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014923:79370*793709957220203Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete6e-0763.9BLASTN svgBLASTP svg
NC_020181:4800298*4800298483905538758Enterobacter aerogenes EA1509E, complete genome6e-0763.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome2e-0661.9BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome2e-0661.9BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome2e-0661.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020054:46541346541348531019898Fibrella aestuarina BUZ 2 drat genome2e-0661.9BLASTN svgBLASTP svg
NC_011751:43739614373961440053726577Escherichia coli UMN026 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002655:28396002839600287010630507Escherichia coli O157:H7 EDL933, complete genome9e-0660BLASTN svgBLASTP svg
NC_002695:27693872769387279989230506Escherichia coli O157:H7 str. Sakai, complete genome9e-0660BLASTN svgBLASTP svg
NC_004431:14016811401681142114919469Escherichia coli CFT073, complete genome9e-0660BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome9e-0660BLASTN svgBLASTP svg
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome9e-0660BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome9e-0660BLASTN svgBLASTP svg
NC_011740:1991941*1991941201386221922Escherichia fergusonii ATCC 35469, complete genome9e-0660BLASTN svgBLASTP svg
NC_011901:3363500*3363500338699623497Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete9e-0660BLASTN svgBLASTP svg
NC_012691:12503851250385127625725873Tolumonas auensis DSM 9187, complete genome9e-0660BLASTN svgBLASTP svg
NC_012791:4007780*4007780403067322894Variovorax paradoxus S110 chromosome 1, complete genome9e-0660BLASTN svgBLASTP svg
NC_015422:3581848*3581848360595924112Alicycliphilus denitrificans K601 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome9e-0660BLASTN svgBLASTP svg