Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:320115 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
320115321068954hypothetical proteinBLASTP
321068321523456hypothetical proteinBLASTP
321526322218693DNA transfer proteinQuickGO ontologyBLASTP
3222293236141386putative DNA transfer proteinQuickGO ontologyBLASTP
3236143254401827putative injection proteinQuickGO ontologyBLASTP
325462326133672hypothetical proteinBLASTP
326165326806642helix-turn-helixpeptidase S24-like domain proteinQuickGO ontologyBLASTP
327153327779627hypothetical proteinBLASTP
327868328461594hypothetical proteinBLASTP
328522328800279ISEhe3 transposase orfAQuickGO ontologyBLASTP
328857329669813ISEhe3 transposase orfBQuickGO ontologyBLASTP
3302403321501911hypothetical proteinBLASTP
332857333174318hypothetical proteinBLASTP
3338373350451209site-specific recombinase phage integrase family proteinQuickGO ontologyBLASTP
3352873364951209putative DNA Methylase familyQuickGO ontologyBLASTP
3364883381941707hypothetical proteinBLASTP
3381393392421104hypothetical proteinBLASTP