Pre_GI Gene

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Host: NC_008563 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008563:1175035 Escherichia coli APEC O1, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
117503511761861152putative ATPaseQuickGO ontologyBLASTP
11761951176656462putative phosphohydrolaseQuickGO ontologyBLASTP
1176666117731965423S rRNA pseudouridine synthaseQuickGO ontologyBLASTP
117749111787411251isocitrate dehydrogenaseQuickGO ontologyBLASTP
117885511799971143prophage lambda integraseQuickGO ontologyBLASTP
11805531180984432hypothetical proteinBLASTP
11818631182543681putative exonuclease encoded by prophage CP-933KQuickGO ontologyBLASTP
11825401183325786putative recombination protein Bet of prophageQuickGO ontologyBLASTP
11833311183627297putative host-nuclease inhibitor protein Gam of bacteriphageQuickGO ontologyBLASTP
11837031183972270Kil proteinQuickGO ontologyBLASTP
11840521184420369putative single-stranded DNA binding protein of prophageQuickGO ontologyBLASTP
11850171185598582putative superinfection exclusion protein B of prophageQuickGO ontologyBLASTP
11856151185959345N proteinQuickGO ontologyBLASTP
11863241187076753hypothetical proteinBLASTP
11870731187513441hypothetical proteinBLASTP
11876701188365696putative CI repressor of bacteriophageQuickGO ontologyBLASTP
11883711188655285hypothetical proteinBLASTP
11887971189093297putative regulatory protein CII of bacteriophageQuickGO ontologyBLASTP
11891261190025900putative replication protein O of bacteriophageQuickGO ontologyBLASTP
11900221190723702putative replication protein P of bacteriophageQuickGO ontologyBLASTP
11907201191010291putative exclusion protein ren of prophageQuickGO ontologyBLASTP
11910841191524441hypothetical proteinBLASTP
11914611192048588putative DNA N-6-adenine-methyltransferase of bacteriophageQuickGO ontologyBLASTP
11921821192565384hypothetical proteinBLASTP
11927721193134363endonuclease RUSQuickGO ontologyBLASTP
11933571193740384antitermination protein Q-like proteinQuickGO ontologyBLASTP
119392911950711143outer membrane porin protein NmpC precursorQuickGO ontologyBLASTP
11958151196312498bacteriophage lambda lysozyme-like proteinQuickGO ontologyBLASTP
11962971196770474putative Rz endopeptidase from lambdoid prophageQuickGO ontologyBLASTP
11968021197110309lambda prophage Bor proteinQuickGO ontologyBLASTP
11975221197902381truncated TonB-like membrane protein encoded within prophageQuickGO ontologyBLASTP
11980251198378354hypothetical protein