Pre_GI Gene

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Host: NC_013716 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:1756545 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
175654517600693525probable pyruvate-flavodoxin oxidoreductaseQuickGO ontologyBLASTP
176042517615581134outer membrane protein N porinQuickGO ontologyBLASTP
17617511762185435universal stress protein FQuickGO ontologyBLASTP
17629821763974993T3SS effector protein NleCQuickGO ontologyBLASTP
17649051765489585putative T3SS effector protein NleG1QuickGO ontologyBLASTP
17657081765992285ISEc14 transposase AQuickGO ontologyBLASTP
17660311766843813ISEc14 transposase BQuickGO ontologyBLASTP
17691271770062936tRNA 2-thiocytidine biosynthesis protein ttcAQuickGO ontologyBLASTP
177010317714761374ATP-independent RNA helicaseQuickGO ontologyBLASTP
17719681772951984zinc transport proteinQuickGO ontologyBLASTP
177320517744101206putative signaling proteinQuickGO ontologyBLASTP
17744581774847390putative 4-carboxymuconolactone decarboxylaseQuickGO ontologyBLASTP
17748371775601765pyrimidine utilization protein DQuickGO ontologyBLASTP
1775579177694313653-carboxy-ciscis-muconate cycloisomeraseQuickGO ontologyBLASTP