Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:289000 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2892582903611104glutamate 5-kinaseQuickGO ontologyBLASTP
2903732916261254gamma-glutamyl phosphate reductaseQuickGO ontologyBLASTP
29174129181676tRNA-ThrQuickGO ontologyBLASTP
2918312929911161site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
293301293645345putative lipoproteinQuickGO ontologyBLASTP
293833294474642hypothetical proteinBLASTP
294476295159684hypothetical proteinBLASTP
295156295782627hypothetical protein
295797295964168hypothetical proteinBLASTP
295981296295315hypothetical proteinBLASTP
296307296666360hypothetical proteinBLASTP
296704296982279ISEhe3 transposase orfAQuickGO ontologyBLASTP
297039297851813ISEhe3 transposase orfBQuickGO ontologyBLASTP
297848298021174hypothetical proteinBLASTP
298005298907903RecT family proteinQuickGO ontologyBLASTP
299193299330138hypothetical proteinBLASTP
299543299911369hypothetical proteinBLASTP
300094300345252hypothetical protein
300479300823345hypothetical proteinBLASTP
300820301125306hypothetical proteinBLASTP
301440302090651P22 repressor protein c2QuickGO ontologyBLASTP
302171302356186regulatory protein CroQuickGO ontologyBLASTP
302472302768297bacteriophage CII proteinQuickGO ontologyBLASTP
302940303839900putative replication protein OQuickGO ontologyBLASTP
3038293052651437replicative DNA helicase homologQuickGO ontologyBLASTP
305342305782441putative ninB proteinQuickGO ontologyBLASTP
305919306095177NINE ProteinQuickGO ontologyBLASTP
306098306457360putative protein ninXQuickGO ontologyBLASTP
306457306633177hypothetical proteinBLASTP
306626306895270hypothetical proteinBLASTP
306895307185291hypothetical proteinBLASTP
307182307544363crossover junction endodeoxyribonuclease RusAQuickGO ontologyBLASTP
307541307729189phage NinH proteinQuickGO ontologyBLASTP
307726308349624antitermination protein QQuickGO ontologyBLASTP
309172309495324phage holin lambda familyQuickGO ontologyBLASTP
309479309955477phage lysozymeQuickGO ontologyBLASTP
309952310389438bacteriophage lysis proteinQuickGO ontologyBLASTP