Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:3307123 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
330712333084871365L-serine ammonia-lyaseQuickGO ontologyBLASTP
33085593308948390putative endoribonuclease L-PSPQuickGO ontologyBLASTP
330896233112562295formate acetyltransferaseQuickGO ontologyBLASTP
331129033124981209propionate kinaseQuickGO ontologyBLASTP
331252433138551332threonineserine transporterQuickGO ontologyBLASTP
33138773314866990threonine dehydratase catabolicQuickGO ontologyBLASTP
33149653315903939transcriptional regulator TdcAQuickGO ontologyBLASTP
33162183316436219threonine dehydratase operon activator proteinQuickGO ontologyBLASTP
33165183316655138hypothetical proteinBLASTP
33166713317231561hypothetical proteinBLASTP
33185213318673153hypothetical protein
33186743318883210hypothetical protein
33188523319152301RNase P class AQuickGO ontologyBLASTP
331924533203901146glycerate kinaseQuickGO ontologyBLASTP
332048733213718852-hydroxy-3-oxopropionate reductaseQuickGO ontologyBLASTP
332140733221777712-dehydro-3-deoxyglucarate aldolaseQuickGO ontologyBLASTP
332219333235271335galactarate permease GarPQuickGO ontologyBLASTP
33237363323855120hypothetical proteinBLASTP
332390233254731572galactarate dehydrataseQuickGO ontologyBLASTP