Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3818600 Shigella flexneri 2a str. 301, complete genome

Start: 3818600, End: 3819571, Length: 972

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002942:675829:6938216938216952271407Legionella pneumophila subsp. pneumophila str. Philadelphia 1,hypothetical protein1e-36153
NC_013851:3478153:3486974348697434883051332Allochromatium vinosum DSM 180 chromosome, complete genometransposase IS4 family protein1e-32140
NC_013851:608089:6126696126696140001332Allochromatium vinosum DSM 180 chromosome, complete genometransposase IS4 family protein1e-32140
NC_013851:3166969:3175505317550531768361332Allochromatium vinosum DSM 180 chromosome, complete genometransposase IS4 family protein1e-32140
NC_013851:2317091:2323976232397623253071332Allochromatium vinosum DSM 180 chromosome, complete genometransposase IS4 family protein3e-32139
NC_013851:608089:6196996196996210301332Allochromatium vinosum DSM 180 chromosome, complete genometransposase IS4 family protein3e-32139
NC_018012:4221612:4233362423336242347351374Thiocystis violascens DSM 198 chromosome, complete genometransposase family protein2e-29129
NC_013194:102000:1183211183211196461326Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetransposase IS4 family protein8e-29127
NC_013194:963735:9811599811599824841326Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetransposase IS4 family protein8e-29127
NC_010658:3014371:301893630189363019244309Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein1e-28127
NC_004851:157675:178876178876179178303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceputative IS1 encoded protein2e-28126
NC_010658:3622610:362924336292433629449207Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein4e-28125
NC_017328:1835108:184761318476131847846234Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein6e-28124
NC_008258:1784637:179439417943941794627234Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein6e-28124
NC_004337:2035945:2050214205021420512481035Shigella flexneri 2a str. 301, complete genomeIS600 ORF27e-28124
NC_004337:3590323:361094436109443611270327Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein8e-28124
NC_008258:1750964:175751217575121757739228Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein2e-27123
NC_008258:3995553:399956839995683999786219Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein2e-27123
NC_010658:2529033:252961125296112530024414Shigella boydii CDC 3083-94, complete genometransposase2e-27123
NC_004337:3590323:360836036083603608683324Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein2e-27123
NC_004337:4374500:439250143925014392824324Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein2e-27123
NC_017328:4417000:443621344362134436536324Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF22e-27123
NC_010658:4494103:450182545018254502505681Shigella boydii CDC 3083-94, complete genomehypothetical protein1e-27123
NC_010660:175200:179672179672179947276Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein1e-27123
NC_017328:3655876:366205036620503662259210Shigella flexneri 2002017 chromosome, complete genomeIS150 ORF14e-27122
NC_008258:269806:284251284251284493243Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-27122
NC_008258:2190635:219995521999552200188234Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-27122
NC_017328:385552:3942543942543966772424Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-27122
NC_008258:4345400:436211743621174362419303Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-27122
NC_008258:3581583:358741335874133587664252Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-27122
NC_004337:3590323:369261536926153693283669Shigella flexneri 2a str. 301, complete genomeIS150 ORF1(ORF A)2e-27122
NC_007613:4156841:417569641756964175926231Shigella boydii Sb227, complete genomeputative IS1 encoded protein2e-27122
NC_008258:2045000:204571820457182045993276Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein8e-27121
NC_017328:2090679:209265220926522092927276Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein8e-27121
NC_007613:3470314:347560334756033475815213Shigella boydii Sb227, complete genomeputative IS1 encoded protein7e-27121
NC_008258:3550500:357198435719843572226243Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein6e-27121
NC_015723:1998363:2006489200648920075321044Cupriavidus necator N-1 chromosome 2, complete sequenceRNA-directed DNA polymerase RetA6e-27121
NC_010658:4257310:427454442745444274732189Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein1e-26120
NC_007613:4217557:424498542449854245218234Shigella boydii Sb227, complete genomeputative IS1 encoded protein1e-26120
NC_010658:1193225:121427612142761214500225Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein1e-26120
NC_010658:1193225:120564212056421205896255Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein1e-26120
NC_010658:3014371:302971830297183029966249Shigella boydii CDC 3083-94, complete genometransposase1e-26120
NC_008258:4345400:436031743603174360583267Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein1e-26120
NC_010658:4494103:449905944990594499292234Shigella boydii CDC 3083-94, complete genometransposase4e-26119
NC_008258:1750964:176193117619311762167237Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-26119
NC_008258:1784637:179112117911211791309189Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-26119
NC_008258:1750964:175453017545301754709180Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-26119
NC_008258:3224721:324186332418633242042180Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-26119
NC_007613:2699500:270599027059902706172183Shigella boydii Sb227, complete genomeputative IS1 encoded protein3e-26119
NC_007712:4023516:4041346404134640425811236Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-26119
NC_006513:148950:1534361534361547281293Azoarcus sp. EbN1, complete genometransposase, is4 family6e-26118
NC_006513:38818:4097640976422681293Azoarcus sp. EbN1, complete genomeputative transposase, is4 family6e-26118
NC_008258:2905413:291300729130072913213207Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein1e-25117
NC_010658:4257310:426604242660424266227186Shigella boydii CDC 3083-94, complete genometransposase1e-25117
NC_008786:1553833:1569918156991815713061389Verminephrobacter eiseniae EF01-2, complete genometransposase, IS4 family protein1e-24114
NC_008786:4040864:4045582404558240469011320Verminephrobacter eiseniae EF01-2, complete genometransposase, IS4 family protein3e-24112
NC_007613:2981829:298999829899982990288291Shigella boydii Sb227, complete genomeputative IS1 encoded protein4e-24112
NC_007613:4119771:413590741359074136077171Shigella boydii Sb227, complete genomeputative IS1 encoded protein8e-23108
NC_007613:1038000:104694910469491047122174Shigella boydii Sb227, complete genomeputative IS1 encoded protein6e-23108
NC_008510:2605500:261796326179632618619657Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1,Transposase, ISLbp45e-23108
NC_008508:2572450:258470225847022585358657Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1,Transposase, ISLbp45e-23108
NC_007613:1038000:105726810572681057438171Shigella boydii Sb227, complete genomeputative IS1 encoded protein9e-23107
NC_007613:4403070:440815544081554408331177Shigella boydii Sb227, complete genomeputative IS1-encoded protein1e-22107
NC_007613:1038000:104126210412621041429168Shigella boydii Sb227, complete genomeputative IS1 encoded protein5e-22105
NC_007613:761234:763110763110763292183Shigella boydii Sb227, complete genomeputative IS1 encoded protein4e-22105
NC_007613:4119771:412460941246094124776168Shigella boydii Sb227, complete genomeputative IS1 encoded protein7e-22104
NC_007613:3470314:347899834789983479168171Shigella boydii Sb227, complete genomeputative IS1 encoded protein9e-22104
NC_007613:4217557:423946642394664239642177Shigella boydii Sb227, complete genomeputative IS1 encoded protein3e-21102
NC_008786:492363:5112585112585123941137Verminephrobacter eiseniae EF01-2, complete genome3e-2099.4
NC_007613:4217557:424181142418114242452642Shigella boydii Sb227, complete genomehypothetical protein5e-2098.6
NC_017328:3088907:314376031437603144023264Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein7e-2098.2
NC_017328:4417000:442183744218374422040204Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K1e-1997.4
NC_008258:3581583:359822535982253598854630Shigella flexneri 5 str. 8401, complete genomeIS150 ORF1(ORF A)1e-1997.4
NC_017328:3794105:381084038108403811019180Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K2e-1997.1
NC_017328:3655876:367282036728203672960141Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF23e-1995.9
NC_017328:4417000:443213344321334432360228Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF27e-1994.7
NC_017328:2225418:223949922394992239660162Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF22e-1893.6
NC_017328:3794105:379472237947223794865144Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K2e-1893.2
NC_017328:3625000:364631336463133646516204Shigella flexneri 2002017 chromosome, complete genomeIS150 ORF15e-1892
NC_007384:3956465:3974605397460539764161812Shigella sonnei Ss046, complete genome6e-1891.7
NC_017328:3655876:365972336597233660127405Shigella flexneri 2002017 chromosome, complete genomeputative alpha-mannosidase7e-1891.7
NC_010468:1775000:1792029179202917936171589Escherichia coli ATCC 8739, complete genome3e-1789.4
NC_007384:1086025:1107697110769711088591163Shigella sonnei Ss046, complete genome1e-1687.4
NC_019902:2372097:2375856237585623781712316Thioalkalivibrio nitratireducens DSM 14787, complete genomeputative transposase3e-1686.3
NC_008781:3302934:330468233046823305119438Polaromonas naphthalenivorans CJ2, complete genome1e-1584.3
NC_020260:882307:911776911776911997222Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-1582.4
NC_015064:1984662:2006270200627020077031434Acidobacterium sp. MP5ACTX9 chromosome, complete genometransposase IS4 family protein4e-1479
NC_010529:296500:300612300612301157546Cupriavidus taiwanensis plasmid pRALTA, complete sequence5e-1479
NC_009484:775828:7862017862017875621362Acidiphilium cryptum JF-5 chromosome, complete genometransposase, IS4 family protein1e-1377.8
NC_011982:206784:2081592081592095801422Agrobacterium vitis S4 plasmid pTiS4, complete sequencetransposase3e-1272.8
NC_015186:2884866:2886469288646928878571389Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-1272.8
NC_015186:347346:3618883618883632761389Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element3e-1272.8
NC_010475:2188827:2205964220596422072921329Synechococcus sp. PCC 7002, complete genometransposase1e-0757.8
NC_019892:5368096:5369424536942453708091386Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase family protein1e-0654.3