Pre_GI: OUP Neighbours

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Query: NC_010610:755000 Lactobacillus fermentum IFO 3956, complete genome

D: 39.2062

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 180




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_004829:64000*Mycoplasma gallisepticum R, complete genome75.0643 %Subject Query16.3968
NC_016011:2875747Listeria ivanovii subsp. ivanovii PAM 55, complete genome76.0907 %Subject Query16.7194
NC_015759:1117122Weissella koreensis KACC 15510 chromosome, complete genome75.1134 %Subject Query16.9808
NC_013656:1549634Lactococcus lactis subsp. lactis KF147, complete genome75.4259 %Subject Query17.1024
NC_015420:35384Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete79.133 %Subject Query17.7985
NC_015759:667505Weissella koreensis KACC 15510 chromosome, complete genome79.4608 %Subject Query18.218
NC_002662:1042546Lactococcus lactis subsp. lactis Il1403, complete genome75.6464 %Subject Query18.3822
NC_004829:312750*Mycoplasma gallisepticum R, complete genome75.4289 %Subject Query19.3494
NC_015391:2099472Carnobacterium sp. 17-4 chromosome, complete genome76.2561 %Subject Query19.7896
NC_016011:678419Listeria ivanovii subsp. ivanovii PAM 55, complete genome76.8076 %Subject Query19.8549
NC_015978:113656Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete78.4252 %Subject Query19.9386
NC_015391:1013608*Carnobacterium sp. 17-4 chromosome, complete genome75.1685 %Subject Query19.9781
NC_015759:760671*Weissella koreensis KACC 15510 chromosome, complete genome77.7022 %Subject Query20.0163
NC_014136:329484Leuconostoc kimchii IMSNU11154 chromosome, complete genome77.4295 %Subject Query20.2253
NC_016011:1910638Listeria ivanovii subsp. ivanovii PAM 55, complete genome75.0153 %Subject Query20.272
NC_008555:696217Listeria welshimeri serovar 6b str. SLCC5334, complete genome75.0276 %Subject Query20.5557
NC_006814:1538175Lactobacillus acidophilus NCFM, complete genome76.4369 %Subject Query20.5704
NC_015391:2059191*Carnobacterium sp. 17-4 chromosome, complete genome76.4951 %Subject Query20.7322
NC_015978:1266196*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete79.7365 %Subject Query20.8603
NC_013656:2317224Lactococcus lactis subsp. lactis KF147, complete genome75.7138 %Subject Query20.892
NC_014259:2948335Acinetobacter sp. DR1 chromosome, complete genome75.3922 %Subject Query21.001
NC_009513:1184000*Lactobacillus reuteri F275, complete genome77.1507 %Subject Query21.0877
NC_015978:32875Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete77.739 %Subject Query21.308
NC_009085:3860346Acinetobacter baumannii ATCC 17978, complete genome75.6066 %Subject Query21.5193
NC_003210:870587Listeria monocytogenes EGD-e, complete genome75.4044 %Subject Query21.799
NC_015391:1248583*Carnobacterium sp. 17-4 chromosome, complete genome75.1072 %Subject Query21.8735
NC_013891:575746Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome76.8995 %Subject Query21.9659
NC_009513:870837Lactobacillus reuteri F275, complete genome77.0527 %Subject Query22.0209
NC_003212:1958500Listeria innocua Clip11262, complete genome75.4504 %Subject Query22.183
NC_003210:2879906*Listeria monocytogenes EGD-e, complete genome75.6066 %Subject Query22.1972
NC_013798:1778758Streptococcus gallolyticus UCN34, complete genome75.3401 %Subject Query22.2763
NC_015428:21724Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.9222 %Subject Query22.2854
NC_015391:504227Carnobacterium sp. 17-4 chromosome, complete genome75.5576 %Subject Query22.3067
NC_015391:448833*Carnobacterium sp. 17-4 chromosome, complete genome76.777 %Subject Query22.5119
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.4038 %Subject Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome82.0956 %Subject Query22.793
NC_008525:606986Pediococcus pentosaceus ATCC 25745, complete genome79.3536 %Subject Query22.793
NC_003212:2293425Listeria innocua Clip11262, complete genome77.0588 %Subject Query22.8265
NC_008527:740060*Lactococcus lactis subsp. cremoris SK11, complete genome75.1072 %Subject Query22.9383
NC_008525:1013979Pediococcus pentosaceus ATCC 25745, complete genome76.7831 %Subject Query22.945
NC_010611:3771778Acinetobacter baumannii ACICU, complete genome75.53 %Subject Query23.1882
NC_015428:2019500*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.7684 %Subject Query23.2156
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome81.9332 %Subject Query23.2612
NC_015978:412856*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete78.2016 %Subject Query23.2933
NC_015602:1143038Lactobacillus kefiranofaciens ZW3 chromosome, complete genome76.9577 %Subject Query23.4253
NC_013891:640784*Listeria seeligeri serovar 1/2b str. SLCC3954, complete genome76.7341 %Subject Query23.8704
NC_014334:1039248Lactobacillus casei str. Zhang chromosome, complete genome75.9375 %Subject Query24.0151
NC_008525:780500Pediococcus pentosaceus ATCC 25745, complete genome76.3051 %Subject Query24.0776
NC_015978:352478*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete78.0024 %Subject Query24.2022
NC_014319:1613611Leuconostoc gasicomitatum LMG 18811, complete genome75.72 %Subject Query24.79
NC_009513:1065704*Lactobacillus reuteri F275, complete genome79.6048 %Subject Query24.8434
NC_008555:1874878*Listeria welshimeri serovar 6b str. SLCC5334, complete genome75.0184 %Subject Query25.1702
NC_003212:456214Listeria innocua Clip11262, complete genome75.0858 %Subject Query25.2446
NC_008530:1454118*Lactobacillus gasseri ATCC 33323, complete genome77.6348 %Subject Query25.3349
NC_004668:3053119*Enterococcus faecalis V583, complete genome77.5184 %Subject Query25.4317
NC_014334:2307950Lactobacillus casei str. Zhang chromosome, complete genome75.4473 %Subject Query25.5593
NC_009004:1770497*Lactococcus lactis subsp. cremoris MG1363, complete genome76.0294 %Subject Query25.5739
NC_010999:349252Lactobacillus casei, complete genome78.171 %Subject Query25.611
NC_014106:244831Lactobacillus crispatus ST1, complete genome78.5202 %Subject Query25.6181
NC_015428:1544728*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome80.8793 %Subject Query25.6452
NC_010080:1885677Lactobacillus helveticus DPC 4571, complete genome77.5 %Subject Query25.9241
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome81.8811 %Subject Query25.9336
NC_014334:369974Lactobacillus casei str. Zhang chromosome, complete genome76.8811 %Subject Query26.4531
NC_015460:2403004Gallibacterium anatis UMN179 chromosome, complete genome75.9865 %Subject Query26.4804
NC_013166:242863Kangiella koreensis DSM 16069, complete genome75.5545 %Subject Query26.5108
NC_014724:1731238*Lactobacillus amylovorus GRL 1112 chromosome, complete genome78.2904 %Subject Query26.547
NC_010999:2059738Lactobacillus casei, complete genome78.4528 %Subject Query26.5655
NC_008525:1493317*Pediococcus pentosaceus ATCC 25745, complete genome77.3039 %Subject Query26.6901
NC_002940:1234410*Haemophilus ducreyi 35000HP, complete genome75.9926 %Subject Query26.6902
NC_015602:117939*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome75.8701 %Subject Query26.7043
NC_014106:54587*Lactobacillus crispatus ST1, complete genome76.3082 %Subject Query26.719
NC_004668:2938000*Enterococcus faecalis V583, complete genome79.905 %Subject Query26.7423
NC_015428:1483768Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.9706 %Subject Query26.7814
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome80.3339 %Subject Query26.8361
NC_009513:1363987*Lactobacillus reuteri F275, complete genome78.9216 %Subject Query26.8839
NC_009513:303043*Lactobacillus reuteri F275, complete genome79.4087 %Subject Query27.0353
NC_011184:597496*Vibrio fischeri MJ11 chromosome I, complete sequence76.2684 %Subject Query27.0599
NC_011184:2421687*Vibrio fischeri MJ11 chromosome I, complete sequence76.1795 %Subject Query27.0599
NC_011184:2369662*Vibrio fischeri MJ11 chromosome I, complete sequence75.6955 %Subject Query27.0599
NC_008530:469802*Lactobacillus gasseri ATCC 33323, complete genome75.4871 %Subject Query27.253
NC_006814:1618588*Lactobacillus acidophilus NCFM, complete genome76.8137 %Subject Query27.2785
NC_008526:1973500Lactobacillus casei ATCC 334, complete genome78.6826 %Subject Query27.286
NC_015978:996933*Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete76.5441 %Subject Query27.3294
NC_010080:1685280*Lactobacillus helveticus DPC 4571, complete genome77.9565 %Subject Query27.4936
NC_006814:51500*Lactobacillus acidophilus NCFM, complete genome75.8793 %Subject Query27.6877
NC_007520:903799*Thiomicrospira crunogena XCL-2, complete genome75.2849 %Subject Query27.7177
NC_012984:1027898Lactobacillus plantarum JDM1, complete genome78.8388 %Subject Query27.8362
NC_015460:2602416Gallibacterium anatis UMN179 chromosome, complete genome75.7169 %Subject Query27.9107
NC_006814:403723*Lactobacillus acidophilus NCFM, complete genome76.5717 %Subject Query27.9291
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome82.1201 %Subject Query28.0034
NC_010080:445398*Lactobacillus helveticus DPC 4571, complete genome75.8824 %Subject Query28.0093
NC_008525:270310*Pediococcus pentosaceus ATCC 25745, complete genome78.9583 %Subject Query28.0475
NC_014106:419511*Lactobacillus crispatus ST1, complete genome77.9351 %Subject Query28.0783
NC_015214:48999*Lactobacillus acidophilus 30SC chromosome, complete genome76.9669 %Subject Query28.1689
NC_012984:3077004Lactobacillus plantarum JDM1, complete genome79.0533 %Subject Query28.2101
NC_010999:2450974*Lactobacillus casei, complete genome75.8303 %Subject Query28.2344
NC_010080:69000*Lactobacillus helveticus DPC 4571, complete genome75.6679 %Subject Query28.2732
NC_013798:345339*Streptococcus gallolyticus UCN34, complete genome77.0282 %Subject Query28.2969
NC_008497:1111891*Lactobacillus brevis ATCC 367, complete genome79.2616 %Subject Query28.4188
NC_013199:1150000Lactobacillus rhamnosus Lc 705, complete genome75.6495 %Subject Query28.4351
NC_008309:842072Haemophilus somnus 129PT, complete genome76.1642 %Subject Query28.533
NC_004605:741000Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete75.2206 %Subject Query28.554
NC_008309:190550Haemophilus somnus 129PT, complete genome77.2641 %Subject Query28.8791
NC_002940:919175*Haemophilus ducreyi 35000HP, complete genome75.0184 %Subject Query28.9051
NC_004668:2762464*Enterococcus faecalis V583, complete genome77.8186 %Subject Query28.9547
NC_015554:4266530Alteromonas sp. SN2 chromosome, complete genome75.1899 %Subject Query28.9929
NC_012984:2709148Lactobacillus plantarum JDM1, complete genome77.0649 %Subject Query29.0035
NC_009052:5089963Shewanella baltica OS155, complete genome75.1103 %Subject Query29.0126
NC_015697:1295412*Lactobacillus reuteri SD2112 chromosome, complete genome79.1115 %Subject Query29.0596
NC_008505:36638*Lactococcus lactis subsp. cremoris SK11 plasmid 3, complete77.3284 %Subject Query29.065
NC_008309:385592Haemophilus somnus 129PT, complete genome75.2175 %Subject Query29.0686
NC_010999:1245239Lactobacillus casei, complete genome75.1777 %Subject ←→ Query29.2811
NC_014334:37040Lactobacillus casei str. Zhang chromosome, complete genome76.9884 %Subject ←→ Query29.347
NC_012984:2681548Lactobacillus plantarum JDM1, complete genome77.2212 %Subject ←→ Query29.4747
NC_012984:520000Lactobacillus plantarum JDM1, complete genome77.3836 %Subject ←→ Query29.4929
NC_009053:1785447*Actinobacillus pleuropneumoniae L20, complete genome75.3033 %Subject ←→ Query29.5139
NC_013199:392450*Lactobacillus rhamnosus Lc 705, complete genome77.5368 %Subject ←→ Query29.6644
NC_012984:1074721Lactobacillus plantarum JDM1, complete genome78.1495 %Subject ←→ Query29.7281
NC_010999:623489Lactobacillus casei, complete genome79.1759 %Subject ←→ Query29.8391
NC_004567:1066710Lactobacillus plantarum WCFS1, complete genome76.6268 %Subject ←→ Query29.9854
NC_015214:1700000*Lactobacillus acidophilus 30SC chromosome, complete genome78.5692 %Subject ←→ Query30.2107
NC_004668:1010610*Enterococcus faecalis V583, complete genome78.0668 %Subject ←→ Query30.421
NC_011852:211314Haemophilus parasuis SH0165, complete genome75.1226 %Subject ←→ Query30.4292
NC_009513:169146*Lactobacillus reuteri F275, complete genome81.0049 %Subject ←→ Query30.5164
NC_008526:565902Lactobacillus casei ATCC 334, complete genome78.796 %Subject ←→ Query30.5707
NC_011186:515214*Vibrio fischeri MJ11 chromosome II, complete sequence76.0447 %Subject ←→ Query30.657
NC_015602:1339067*Lactobacillus kefiranofaciens ZW3 chromosome, complete genome77.7328 %Subject ←→ Query30.661
NC_004668:3156247*Enterococcus faecalis V583, complete genome77.4173 %Subject ←→ Query30.8008
NC_013198:1030970*Lactobacillus rhamnosus GG, complete genome75.5821 %Subject ←→ Query30.8386
NC_015697:1480552*Lactobacillus reuteri SD2112 chromosome, complete genome76.7065 %Subject ←→ Query30.867
NC_004567:343500Lactobacillus plantarum WCFS1, complete genome81.5778 %Subject ←→ Query30.9556
NC_007576:1564739*Lactobacillus sakei subsp. sakei 23K, complete genome80.1103 %Subject ←→ Query31.0118
NC_015214:1458480Lactobacillus acidophilus 30SC chromosome, complete genome78.6887 %Subject ←→ Query31.0242
NC_013198:394000*Lactobacillus rhamnosus GG, complete genome77.356 %Subject ←→ Query31.056
NC_014724:439594*Lactobacillus amylovorus GRL 1112 chromosome, complete genome79.0809 %Subject ←→ Query31.0692
NC_015697:742500*Lactobacillus reuteri SD2112 chromosome, complete genome81.5594 %Subject ←→ Query31.0853
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete76.5012 %Subject ←→ Query31.098
NC_004567:1089231Lactobacillus plantarum WCFS1, complete genome77.0741 %Subject ←→ Query31.1476
NC_015428:1668465*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.6832 %Subject ←→ Query31.3716
NC_010999:1381497*Lactobacillus casei, complete genome76.9516 %Subject ←→ Query31.3851
NC_013198:36829Lactobacillus rhamnosus GG, complete genome76.2837 %Subject ←→ Query31.5674
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome78.4344 %Subject ←→ Query31.6209
NC_004668:3184319*Enterococcus faecalis V583, complete genome76.9608 %Subject ←→ Query31.8458
NC_010999:2155714Lactobacillus casei, complete genome75.962 %Subject ←→ Query31.9385
NC_013199:1966334*Lactobacillus rhamnosus Lc 705, complete genome76.0631 %Subject ←→ Query31.9404
NC_015697:321311*Lactobacillus reuteri SD2112 chromosome, complete genome79.7028 %Subject ←→ Query31.9917
NC_008528:331260Oenococcus oeni PSU-1, complete genome78.5141 %Subject ←→ Query32.0829
NC_007576:471500*Lactobacillus sakei subsp. sakei 23K, complete genome80.818 %Subject ←→ Query32.0931
NC_007576:299266*Lactobacillus sakei subsp. sakei 23K, complete genome80.5362 %Subject ←→ Query32.1055
NC_015697:1814128*Lactobacillus reuteri SD2112 chromosome, complete genome79.424 %Subject ←→ Query32.1075
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,78.1189 %Subject ←→ Query32.2258
NC_009513:618000*Lactobacillus reuteri F275, complete genome75.2941 %Subject ←→ Query32.4327
NC_010410:3719599*Acinetobacter baumannii AYE, complete genome75.6005 %Subject ←→ Query32.4692
NC_010611:208268*Acinetobacter baumannii ACICU, complete genome75.6097 %Subject ←→ Query32.4822
NC_013198:1095591Lactobacillus rhamnosus GG, complete genome75.1716 %Subject ←→ Query32.5093
NC_015214:437733*Lactobacillus acidophilus 30SC chromosome, complete genome77.9779 %Subject ←→ Query32.6745
NC_008322:2716676Shewanella sp. MR-7, complete genome75.7629 %Subject ←→ Query32.7019
NC_014724:59000*Lactobacillus amylovorus GRL 1112 chromosome, complete genome77.0312 %Subject ←→ Query32.951
NC_013166:1149760*Kangiella koreensis DSM 16069, complete genome75.6036 %Subject ←→ Query33.1195
NC_014334:1954333Lactobacillus casei str. Zhang chromosome, complete genome76.5441 %Subject ←→ Query33.3293
NC_013198:1538792*Lactobacillus rhamnosus GG, complete genome77.9228 %Subject ←→ Query33.5442
NC_013199:2058857*Lactobacillus rhamnosus Lc 705, complete genome77.5919 %Subject ←→ Query33.7873
NC_015697:33665*Lactobacillus reuteri SD2112 chromosome, complete genome80.3738 %Subject ←→ Query33.9576
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete78.75 %Subject ←→ Query34.2781
NC_003910:2588000Colwellia psychrerythraea 34H, complete genome75.4013 %Subject ←→ Query34.4966
NC_008525:664500*Pediococcus pentosaceus ATCC 25745, complete genome76.5962 %Subject ←→ Query34.8304
NC_008577:2402165Shewanella sp. ANA-3 chromosome 1, complete sequence75.3094 %Subject ←→ Query34.8689
NC_013198:2088780*Lactobacillus rhamnosus GG, complete genome77.6317 %Subject ←→ Query35.0489
NC_007520:1627978*Thiomicrospira crunogena XCL-2, complete genome75.2114 %Subject ←→ Query35.293
NC_007576:435713*Lactobacillus sakei subsp. sakei 23K, complete genome78.1036 %Subject ←→ Query35.5911
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome75.6587 %Subject ←→ Query36.7806
NC_014727:1877764Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,75.5453 %Subject ←→ Query37.472
NC_008054:1649160Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete76.1949 %Subject ←→ Query37.6607
NC_010610:1649500Lactobacillus fermentum IFO 3956, complete genome77.5643 %Subject ←→ Query39.2201
NC_008529:1663000Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete77.1446 %Subject ←→ Query39.7277
NC_010610:2013659Lactobacillus fermentum IFO 3956, complete genome78.4222 %Subject ←→ Query43.0803
NC_013731:11605*Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence75.8211 %Subject ←→ Query43.3836
NC_015214:1853106Lactobacillus acidophilus 30SC chromosome, complete genome76.1152 %Subject ←→ Query43.7956
NC_010610:1580483*Lactobacillus fermentum IFO 3956, complete genome82.1814 %Subject ←→ Query44.2348
NC_010610:795975Lactobacillus fermentum IFO 3956, complete genome79.9877 %Subject ←→ Query44.835