Pre_GI Gene

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Host: NC_015978 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015978:352478 Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete

Host Lineage: Lactobacillus sanfranciscensis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This is the characteristic organism in wheat sourdough. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3524783536351158hypothetical proteinBLASTP
353816354595780hypothetical proteinBLASTP
354625354945321hypothetical proteinBLASTP
3559283570071080hypothetical proteinBLASTP
35706435776269923-bisphosphoglycerate-dependent phosphoglycerate mutase 2QuickGO ontologyBLASTP
3578763593541479MFS-type transporter YcnBQuickGO ontologyBLASTP
359374360129756hypothetical protein
36217636224873tRNA-AlaQuickGO ontologyBLASTP
365668366549882hypothetical proteinBLASTP
36895236902473tRNA-AlaQuickGO ontologyBLASTP
372607372981375Large-conductance mechanosensitive channelQuickGO ontologyBLASTP
3729943752942301hypothetical proteinBLASTP
3755983766171020Tryptophanyl-tRNA synthetaseQuickGO ontologyBLASTP
376639377568930hypothetical proteinBLASTP
37758837884412573-hydroxy-3-methylglutaryl-coenzyme A reductaseQuickGO ontologyBLASTP
378846379808963hypothetical protein
379822380532711NAD-dependent deacetylaseQuickGO ontologyBLASTP
380535381371837hypothetical proteinBLASTP
3814383834862049methionyl-tRNA synthetaseQuickGO ontologyBLASTP
383504384319816deoxyribonuclease YabDQuickGO ontologyBLASTP