Pre_GI Gene

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Host: NC_015978 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015978:996933 Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete

Host Lineage: Lactobacillus sanfranciscensis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This is the characteristic organism in wheat sourdough. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
996149996991843putative inorganic polyphosphateATP-NAD kinaseQuickGO ontologyBLASTP
996933997580648hypothetical proteinBLASTP
997744998313570hypothetical proteinBLASTP
99840110002331833Group B oligopeptidase pepBQuickGO ontologyBLASTP
100019010012571068hypothetical proteinBLASTP
10013061002001696hypothetical proteinBLASTP
10020131002756744hypothetical proteinBLASTP
10028441003344501hypothetical proteinBLASTP
1003672100374372tRNA-GluQuickGO ontologyBLASTP
1004044100411673tRNA-PheQuickGO ontology
1004532100460574tRNA-MetQuickGO ontology
1004637100471074tRNA-ProQuickGO ontology
1004965100503773tRNA-ThrQuickGO ontologyBLASTP
1005069100514173tRNA-LysQuickGO ontology
1005144100521673tRNA-ValQuickGO ontology
1008508100858073tRNA-AlaQuickGO ontologyBLASTP
10108141011719906putative transposase insK for insertion sequence element IS150QuickGO ontologyBLASTP
10116681012171504hypothetical proteinBLASTP
101224510142361992glycerol phosphate lipoteichoic acid synthase 1QuickGO ontologyBLASTP
101434010153531014hypothetical proteinBLASTP
101533710163921056hypothetical proteinBLASTP
101639610176071212hypothetical proteinBLASTP
10176961017962267phosphocarrier protein HPrQuickGO ontologyBLASTP
10180651018259195hypothetical proteinBLASTP
101839610204172022ATP-dependent Clp protease ATP-binding subunit clpEQuickGO ontologyBLASTP
10204911021396906putative transposase insK for insertion sequence element IS150QuickGO ontologyBLASTP
10213451021848504hypothetical proteinBLASTP