Pre_GI Gene

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Host: NC_015978 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015978:412856 Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete

Host Lineage: Lactobacillus sanfranciscensis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This is the characteristic organism in wheat sourdough. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
412856413143288protein YabOQuickGO ontologyBLASTP
413212413571360hypothetical protein
413650414093444protein YabRQuickGO ontologyBLASTP
4141134154981386hypothetical proteinBLASTP
415510416052543hypothetical proteinBLASTP
4161204181682049cell division protease ftsH-like proteinQuickGO ontologyBLASTP
41823141912489433 kDa chaperoninQuickGO ontologyBLASTP
4191244201521029putative tRNA-dihydrouridine synthase 1QuickGO ontologyBLASTP
4201994217251527Lysyl-tRNA synthetaseQuickGO ontologyBLASTP
42385542392773tRNA-AlaQuickGO ontologyBLASTP
42722242729473tRNA-AsnQuickGO ontology
427562427948387HTH-type transcriptional regulator glnRQuickGO ontologyBLASTP
4279644293101347glutamine synthetaseQuickGO ontologyBLASTP
4294474309281482Di-tripeptide transporterQuickGO ontologyBLASTP
431333432055723hypothetical proteinBLASTP
4321684336341467Nicotinate phosphoribosyltransferaseQuickGO ontologyBLASTP
433682434485804NH3-dependent NAD synthetaseQuickGO ontologyBLASTP
4345234367062184hypothetical proteinBLASTP
436764437201438SprT-like proteinQuickGO ontologyBLASTP
437440438408969membrane-bound protein lytRQuickGO ontologyBLASTP
43878343948470223-bisphosphoglycerate-dependent phosphoglycerate mutase 1QuickGO ontologyBLASTP
439699440634936hypothetical proteinBLASTP