Pre_GI Gene

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Host: NC_008530 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008530:1454118 Lactobacillus gasseri ATCC 33323, complete genome

Host Lineage: Lactobacillus gasseri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Lactobacillus gasseri ATCC 33323 is a human isolate and is the type strain. This organism has been shown to have probiotic activities such as production of bacteriocins, macrophage stimulation and adherence to intestinal tissues. Normal gastrointestinal bacterium. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus gasseri is a rod-shaped, gram-positive anaerobe. Of the lactobacilli, it is the most amenable to DNA introduction and manipulation which should prove useful in the functional genomic analysis of this species. It has been shown to be an effective probiotic in suppressing Helicobacter pylori infections in humans.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14560331456281249Predicted transcriptional regulatorQuickGO ontologyBLASTP
145626214579171656Predicted ATPaseQuickGO ontologyBLASTP
14579011458149249hypothetical proteinBLASTP
145811814593471230Zn-ribbon containing proteinQuickGO ontologyBLASTP
14595591460230672DNA-directed RNA polymerase specialized sigma subunitQuickGO ontologyBLASTP
14605121460829318hypothetical proteinBLASTP
146082614619651140hypothetical proteinBLASTP
14619221462518597hypothetical proteinBLASTP
146257314645071935DNA polymerase I - 3-5 exonuclease and polymerase domainQuickGO ontologyBLASTP
14645921464978387hypothetical proteinBLASTP
146486314672292367Phage DNA polymerase ATPase domainQuickGO ontologyBLASTP
14674011467712312Phage associated proteinQuickGO ontologyBLASTP
146769314690451353Superfamily II DNARNA helicase SNF2 familyQuickGO ontologyBLASTP
14690421469509468Restriction endonucleaseQuickGO ontologyBLASTP
14701521470694543hypothetical proteinBLASTP
147069414719201227ParB-like nuclease domain and DNA modification methylase domainQuickGO ontologyBLASTP
14719931472613621hypothetical proteinBLASTP
147451314757781266hypothetical proteinBLASTP
14757751476446672Protease subunit of ATP-dependent Clp proteaseQuickGO ontologyBLASTP
147646614776441179Predicted phage phi-C31 gp36 major capsid-like proteinQuickGO ontologyBLASTP
14779391478322384Bacteriophage head-tail adaptorQuickGO ontologyBLASTP
14781771478719543Phage-related holinQuickGO ontologyBLASTP
14787191479597879Lyzozyme M1 14-beta-N-acetylmuramidaseQuickGO ontologyBLASTP
14800691480308240hypothetical proteinBLASTP
148033814819991662Site-specific recombinase DNA invertase Pin related proteinQuickGO ontologyBLASTP
148203814835581521Site-specific recombinase DNA invertase Pin related proteinQuickGO ontologyBLASTP
148361014848241215hypothetical protein
148521214865641353tRNA uracil-5--methyltransferase related enzymeQuickGO ontologyBLASTP
14866101487293684hypothetical proteinBLASTP
14872861487990705ABC-type multidrug transport system ATPase componentQuickGO ontologyBLASTP
148835514897311377NaH antiporterQuickGO ontologyBLASTP
14895631489742180hypothetical protein