Pre_GI Gene

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Host: NC_013199 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013199:392450 Lactobacillus rhamnosus Lc 705, complete genome

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
392450393385936Inosine-uridine nucleoside N-ribohydrolaseQuickGO ontologyBLASTP
3933973948031407cryptic C4-dicarboxylate transporter DcuDQuickGO ontologyBLASTP
394819395316498acetyltransferase GNAT familyQuickGO ontology
395358396098741transcriptional regulator GntR familyQuickGO ontologyBLASTP
396309397106798predicted ORFQuickGO ontologyBLASTP
397166397729564predicted ORFQuickGO ontologyBLASTP
3977633992921530L-xylulose kinase crypticQuickGO ontologyBLASTP
399326400090765beta-ketoacyl-acyl carrier protein reductaseQuickGO ontologyBLASTP
400111401109999D-isomer specific 2-hydroxyacid dehydrogenase catalytic regionD-isomer specific 2-hydroxyacid dehydrogenase NAD-bindingQuickGO ontologyBLASTP
4011424024011260PTS system galactitol-specific EIIC componentQuickGO ontologyBLASTP
4026624045301869predicted ORFQuickGO ontologyBLASTP
404520405386867fructose-bisphosphate aldolase class II familyQuickGO ontologyBLASTP
4054264073691944PTS system fructose-specific IIABC component fruA-2QuickGO ontologyBLASTP
4076554088931239L-sorbose-1-phosphate reductaseQuickGO ontologyBLASTP
409023409970948transcriptional regulator SorR sorbitol operon regulatorQuickGO ontologyBLASTP
410115410915801D-sorbitol 6-phosphate 2-dehydrogenaseQuickGO ontologyBLASTP
410950411366417PTS system sorbose IIA componentQuickGO ontologyBLASTP
411366411860495PTS system sorbose IIB componentQuickGO ontologyBLASTP
411874412707834PTS system mannose-specific IIC component ManYQuickGO ontologyBLASTP
412726413574849PTS system mannosefructosesorbose IID componentQuickGO ontologyBLASTP
413763414662900D-fructose-16-biphosphate aldolase class II familyQuickGO ontologyBLASTP
4147954162791485predicted ORFQuickGO ontologyBLASTP
4162814175581278predicted ORFQuickGO ontologyBLASTP
417704418597894predicted ORFQuickGO ontologyBLASTP
418877419713837DNA-directed RNA polymerase subunit deltaQuickGO ontologyBLASTP