Pre_GI Gene

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Host: NC_015978 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_015978:1266196 Lactobacillus sanfranciscensis TMW 1.1304 chromosome, complete

Host Lineage: Lactobacillus sanfranciscensis; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This is the characteristic organism in wheat sourdough. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
126247512662033729ATP-dependent helicasenuclease subunit AQuickGO ontologyBLASTP
126619612697533558ATP-dependent helicasedeoxyribonuclease subunit BQuickGO ontologyBLASTP
12697631270317555hypothetical proteinBLASTP
127042612717931368Guaninehypoxanthine permease pbuGQuickGO ontologyBLASTP
12718761272781906putative transposase insK for insertion sequence element IS150QuickGO ontologyBLASTP
12727301273266537hypothetical proteinBLASTP
12734151273612198hypothetical protein
12811321281887756hypothetical protein
12820861282742657putative glutamine ABC transporter permease glnPQuickGO ontologyBLASTP
12827541283407654putative glutamine ABC transporter permease glnMQuickGO ontologyBLASTP
12833861284177792ABC transporter glutamine-binding protein glnHQuickGO ontologyBLASTP
12842671285079813glutamine transport ATP-binding protein glnQQuickGO ontologyBLASTP
128522312866321410Cardiolipin synthetaseQuickGO ontologyBLASTP
128681312881351323aminopeptidase EQuickGO ontologyBLASTP
12882181288853636hypothetical proteinBLASTP
12888921289830939hypothetical proteinBLASTP
12898451290738894hypothetical proteinBLASTP
12908151291708894hypothetical proteinBLASTP
12917511292083333hypothetical proteinBLASTP
12920761292315240hypothetical protein
129239712942111815tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmGQuickGO ontologyBLASTP
129436812957651398tRNA modification GTPase mnmEQuickGO ontologyBLASTP