Pre_GI: BLASTP Hits

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Query: NC_012125:2826624:2843670 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 2843670, End: 2843879, Length: 210

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2857699:286167128616712862009339Salmonella enterica subsp. enterica serovar Choleraesuis strTransposase insN for insertion sequence element IS3e-33140
NC_011740:2859933:286655528665552866893339Escherichia fergusonii ATCC 35469, complete genome3e-33140
NC_004337:4374500:439355943935594393897339Shigella flexneri 2a str. 301, complete genomeIS911 ORF11e-31135
NC_004851:191709:216790216790217128339Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS911 ORF11e-31135
NC_014121:3627588:366667736666773666979303Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfB8e-32135
NC_014121:4299500:432301043230104323312303Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfB8e-32135
NC_014121:2330451:233852223385222338824303Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative IS911 transposase orfB8e-32135
NC_004741:2456297:245629724562972456599303Shigella flexneri 2a str. 2457T, complete genomeIS911 orfA8e-32135
NC_004741:4364235:438579143857914386093303Shigella flexneri 2a str. 2457T, complete genomeIS911 orfA8e-32135
NC_004337:2478461:247817824781782478480303Shigella flexneri 2a str. 301, complete genomeIS911 ORF18e-32135
NC_008258:1873805:187703318770331877335303Shigella flexneri 5 str. 8401, complete genomeIS911 ORF18e-32135
NC_017319:192482:217234217234217536303Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS911 ORF18e-32135
NC_007606:1209132:121876512187651219067303Shigella dysenteriae Sd197, complete genomeIS911 ORF12e-31134
NC_008253:3941938:397827739782773978579303Escherichia coli 536, complete genomeputative transposase1e-31134
NC_008253:3122148:315522931552293155531303Escherichia coli 536, complete genomeprobable transposase protein1e-31134
NC_008253:2828573:284248828424882842790303Escherichia coli 536, complete genomeputative transposase1e-31134
NC_007608:97092:121915121915122253339Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS911 ORF14e-31133
NC_014121:489500:516355516355516564210Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeIS911 orfB4e-31133
NC_010660:33109:415224152241824303Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS911, transposase orfA3e-31133
NC_010658:2529033:253361025336102533912303Shigella boydii CDC 3083-94, complete genomeIS911, transposase orfA3e-31133
NC_016822:1431200:147404114740411474343303Shigella sonnei 53G, complete genomeIS911 orf13e-31133
NC_012214:2805297:281743728174372817739303Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable fragment6e-31132
NC_012214:1117325:112660611266061126908303Erwinia pyrifoliae Ep1/96, complete genometransposase6e-31132
NC_012214:1212616:122310512231051223407303Erwinia pyrifoliae Ep1/96, complete genometransposase, orf A6e-31132
NC_012214:1355500:136826213682621368564303Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable orf A6e-31132
NC_015963:117178:146644146644146946303Enterobacter asburiae LF7a plasmid pENTAS01, complete sequencetransposase IS3/IS911 family protein6e-31132
NC_011415:4767892:478541247854124785744333Escherichia coli SE11 chromosome, complete genometransposase2e-30130
NC_010694:1052722:107302010730201073358339Erwinia tasmaniensis, complete genomeTransposase insN for insertion sequence element IS9114e-30129
NC_014618:1452927:146163514616351461937303Enterobacter cloacae SCF1 chromosome, complete genometransposase IS3/IS911 family protein5e-30129
NC_012583:440420:464116464116464460345Vibrio cholerae O395 chromosome chromosome II, complete sequenceISVch4 transposase, OrfA9e-25112
NC_012582:2013515:202291020229102023254345Vibrio cholerae O395 chromosome chromosome I, complete sequenceISVch4 transposase, OrfA9e-25112
NC_012580:353273:370503370503370847345Vibrio cholerae M66-2 chromosome II, complete sequenceISVch4 transposase, OrfB9e-25112
NC_012578:1838470:188552118855211885865345Vibrio cholerae M66-2 chromosome I, complete sequenceISVch4 transposase, OrfA9e-25112
NC_009457:1444449:149149114914911491835345Vibrio cholerae O395 chromosome 2, complete sequencetransposase OrfAB subunit A9e-25112
NC_009456:787322:799482799482799826345Vibrio cholerae O395 chromosome 1, complete sequencetransposase OrfAB subunit A9e-25112
NC_009456:787322:794155794155794499345Vibrio cholerae O395 chromosome 1, complete sequencetransposase OrfAB subunit A9e-25112
NC_002506:324552:358053358053358397345Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetransposase OrfAB, subunit A9e-25112
NC_002505:1931750:193838819383881938732345Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetransposase OrfAB, subunit A9e-25112
NC_002505:238569:262326262326262670345Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetransposase OrfAB, subunit A9e-25112
NC_002506:370629:435419435419435763345Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completetransposase OrfAB, subunit A9e-25112
NC_012667:931390:931390931390931734345Vibrio cholerae MJ-1236 chromosome 2, complete genometransposase OrfAB subunit A9e-25112
NC_012667:931390:100332310033231003667345Vibrio cholerae MJ-1236 chromosome 2, complete genometransposase OrfAB subunit A9e-25112
NC_016445:1027143:105534210553421055659318Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit A6e-25112
NC_016446:49618:831208312083428309Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completetransposase OrfAB, subunit A6e-25112
NC_016446:119914:135996135996136304309Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completetransposase OrfAB, subunit A6e-25112
NC_016445:2938887:295416129541612954469309Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit A6e-25112
NC_016445:1363831:140978914097891410097309Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetransposase OrfAB, subunit A6e-25112
NC_015633:2565753:257612025761202576464345Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase7e-25112
NC_016945:370471:435238435238435582345Vibrio cholerae IEC224 chromosome II, complete sequencetransposase OrfAB subunit A9e-25112
NC_016945:324519:357871357871358215345Vibrio cholerae IEC224 chromosome II, complete sequencetransposase OrfAB subunit A9e-25112
NC_016944:238580:262337262337262681345Vibrio cholerae IEC224 chromosome I, complete sequencetransposase OrfAB subunit A9e-25112
NC_016944:1978058:198469619846961985040345Vibrio cholerae IEC224 chromosome I, complete sequencetransposase OrfAB subunit A9e-25112
NC_012668:1688500:170877517087751709119345Vibrio cholerae MJ-1236 chromosome 1, complete sequencetransposase OrfAB subunit A9e-25112
NC_014306:3102000:310975731097573110068312Erwinia billingiae Eb661, complete genomeTransposase OrfAB, subunit A1e-24111
NC_013971:73037:874338743387867435Erwinia amylovora ATCC 49946 chromosome, complete genometransposase4e-24110
NC_013364:2672837:269686426968642697232369Escherichia coli O111:H- str. 11128, complete genome4e-24109
NC_008563:4739333:475578047557804756103324Escherichia coli APEC O1, complete genometransposase InsN for insertion sequence element IS911B4e-24109
NC_011742:4655373:467044246704424670765324Escherichia coli S88 chromosome, complete genometransposase ORF A, IS3 family4e-24109
NC_011566:4709672:471941947194194719727309Shewanella piezotolerans WP3, complete genomeISSwp4, transposase OrfA9e-24108
NC_014800:329861:352451352451352774324Pseudoalteromonas sp. SM9913 chromosome chromosome II, completetransposase IS3/IS911 family protein2e-23107
NC_012947:3917619:392474739247473925019273Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS3/IS911 family protein7e-23105
NC_012967:4473368:448908944890894489361273Escherichia coli B str. REL606 chromosome, complete genomeIS911 protein7e-23105
AC_000091:4501430:451187745118774512143267Escherichia coli W3110 DNA, complete genomepartial regulator of insertion element IS911B6e-23105
NC_000913:4494773:450522045052204505486267Escherichia coli K12, complete genomeKpLE2 phage-like element; partial regulator of insertion element IS911B6e-23105
NC_010473:4596500:460702846070284607294267Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; partial regulator of insertion element IS911B6e-23105
NC_008253:4735418:475703447570344757369336Escherichia coli 536, complete genomeprobable transposase protein1e-22104
NC_009999:38832:613386133861649312Shewanella baltica OS195 plasmid pS19502, complete sequencetransposase IS3/IS911 family protein1e-21101
NC_009997:5188221:521562552156255215936312Shewanella baltica OS195, complete genometransposase IS3/IS911 family protein1e-21101
NC_009997:2699644:270561127056112705922312Shewanella baltica OS195, complete genometransposase IS3/IS911 family protein1e-21101
NC_008345:3756977:376294237629423763253312Shewanella frigidimarina NCIMB 400, complete genometransposase IS3/IS911 family protein1e-21101
NC_017270:220282:245474245474245659186Vibrio cholerae LMA3984-4 chromosome chromosome I, completehypothetical protein2e-21100
NC_010067:4418000:443261444326144432937324Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-21100
NC_020063:4127161:413226041322604132571312Enterobacteriaceae bacterium strain FGI 57, complete genometransposase1e-1995.1
NC_010488:48868:673566735667667312Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequencehypothetical protein3e-1993.6
NC_012967:3769499:378592037859203786267348Escherichia coli B str. REL606 chromosome, complete genometransposase4e-1993.6
NC_012947:44512:582065820658517312Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS3/IS911 family protein4e-1993.6
AP010958:3669500:371511937151193715466348Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted IS602 transposase OrfA3e-1993.6
NC_013353:3669500:371511937151193715466348Escherichia coli O103:H2 str. 12009, complete genomeIS602 transposase OrfA3e-1993.6
NC_011748:2973968:299168929916892992036348Escherichia coli 55989, complete genometransposase ORF A, IS3 family3e-1993.6
CU928145:2973968:299168929916892992036348Escherichia coli 55989 chromosome, complete genometransposase ORF A, IS3 family3e-1993.6
NC_011415:1472500:149204614920461492393348Escherichia coli SE11 chromosome, complete genomehypothetical protein3e-1993.6
NC_013364:3701895:375685437568543757201348Escherichia coli O111:H- str. 11128, complete genomeputative IS602 transposase OrfA3e-1993.6
NC_013941:1613595:161801916180191618366348Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1993.2
NC_013941:4470932:447228444722844472631348Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1993.2
NC_009783:1665610:168667616866761686987312Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein4e-1993.2
NC_010498:1094000:111515511151551115466312Escherichia coli SMS-3-5, complete genomeIS911 transposase orfA7e-1992.8
NC_010498:301000:314956314956315267312Escherichia coli SMS-3-5, complete genomeIS911 transposase orfA9e-1992
NC_011750:1094000:109738510973851097732348Escherichia coli IAI39 chromosome, complete genometransposase ORF A, IS3 family9e-1992
NC_008740:443274:462564462564462869306Marinobacter aquaeolei VT8, complete genometransposase IS3/IS911 family protein7e-1785.9
NC_008739:41793:596425964259947306Marinobacter aquaeolei VT8 plasmid pMAQU02, complete sequencetransposase IS3/IS911 family protein7e-1785.9
NC_010067:2488141:250559925055992505850252Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1581.3
NC_004459:349500:367974367974368270297Vibrio vulnificus CMCP6 chromosome I, complete sequencePutative transposase5e-1579.7
NC_009654:1729159:173458817345881734893306Marinomonas sp. MWYL1, complete genometransposase IS3/IS911 family protein5e-1476.3
NC_002516:1031386:106206110620611062369309Pseudomonas aeruginosa PAO1, complete genomehypothetical protein9e-1475.5
NC_002516:2113186:211858521185852118893309Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-1375.1
NC_008463:282565:298567298567298875309Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-1375.1
NC_008463:4566976:458784145878414588149309Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible transposase1e-1375.1
NC_009656:2422083:242924624292462429554309Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-1375.1
NC_009656:2512733:253924225392422539550309Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-1375.1
NC_018080:1834754:184939318493931849701309Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1375.1
NC_018080:2288700:229778022977802298088309Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1375.1
NC_018080:2288700:230736523073652307673309Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1375.1
NC_018080:4280401:429320242932024293510309Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1375.1
NC_018080:5070687:508200050820005082308309Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1375.1
NC_016614:1543333:155484115548411555152312Vibrio sp. EJY3 chromosome 2, complete sequencetransposase IS3/IS911 family protein1e-1375.1
NC_009656:6224221:623073762307376231045309Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein3e-1373.9
NC_009434:2006500:201519820151982015506309Pseudomonas stutzeri A1501, complete genometransposase3e-1373.9
NC_010515:1205258:120981712098171210125309Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein1e-1272
NC_002695:3852233:387522238752223875566345Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-1271.2
NC_013008:3911356:393434539343453934689345Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase2e-1271.2
NC_008800:2806827:284479928447992845131333Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,IS1329 transposase A3e-1270.9
NC_014311:1635408:164167716416771642009333Ralstonia solanacearum PSI07 chromosome, complete genometransposase, insN transposase4e-1270.1
NC_011745:2209288:227555222755522275677126Escherichia coli ED1a chromosome, complete genometransposase ORF A, IS911 (fragment)4e-1270.1
NC_008543:61000:737627376274070309Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS3/IS911 family protein6e-1269.7
NC_010515:1428664:144444514444451444753309Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein6e-1269.7
NC_008061:2193000:219570321957032196011309Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS3/IS9116e-1269.7
NC_003295:2507850:251507625150762515384309Ralstonia solanacearum GMI1000, complete genomePROBABLE TRANSPOSASE PROTEIN2e-1168.2
NC_016944:514742:532079532079532204126Vibrio cholerae IEC224 chromosome I, complete sequencetransposase OrfAB subunit A2e-1167.8
NC_020209:5077410:509344250934425093750309Pseudomonas poae RE*1-1-14, complete genomeISPsy24, transposase orfA4e-1166.6
NC_015733:2658337:268290826829082683216309Pseudomonas putida S16 chromosome, complete genomeputative transposase4e-1166.6
NC_017986:4790482:483093748309374831245309Pseudomonas putida ND6 chromosome, complete genomeputative transposase4e-1166.6
NC_017986:4931104:495697049569704957278309Pseudomonas putida ND6 chromosome, complete genomeputative transposase4e-1166.6
NC_008463:2467219:249167424916742491988315Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein7e-1165.9
NC_005773:3220500:323854532385453238853309Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfA1e-1065.5
NC_005773:4282840:429006642900664290374309Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfA1e-1065.5
NC_005773:4028500:404085240408524041160309Pseudomonas syringae pv. phaseolicola 1448A, complete genomeISPsy24, transposase orfA1e-1065.5
NC_002947:4994335:501418850141885014496309Pseudomonas putida KT2440, complete genometransposase, OrfA2e-1064.7
NC_012660:5793200:580859758085975808905309Pseudomonas fluorescens SBW25 chromosome, complete genometransposase for insertion sequence element2e-1064.7
NC_008027:2051821:205599620559962056304309Pseudomonas entomophila L48, complete genometransposase, OrfA4e-1063.5
NC_009524:263587:276694276694277005312Psychrobacter sp. PRwf-1 chromosome, complete genometransposase IS3/IS911 family protein9e-1062.4
NC_017506:93494:130373130373130678306Marinobacter adhaerens HP15 chromosome, complete genometransposase, OrfA2e-0961.6
NC_007951:769500:782522782522782818297Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase7e-0752.8
NC_007951:2206263:221900022190002219296297Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase, ISRSO8 orfA like7e-0752.8
NC_012721:770651:798647798647798985339Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase6e-0752.8
NC_013889:1159343:116411611641161164406291Thioalkalivibrio sp. K90mix chromosome, complete genometransposase IS3/IS911 family protein9e-0752.4
NC_013889:1623697:163662216366221636912291Thioalkalivibrio sp. K90mix chromosome, complete genometransposase IS3/IS911 family protein9e-0752.4
NC_011770:1811874:182078518207851820931147Pseudomonas aeruginosa LESB58, complete genomehypothetical protein8e-0752.4
NC_008253:4735418:477332247733224773642321Escherichia coli 536, complete genomeputative transposase8e-0752.4
NC_008826:517458:536261536261536581321Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceISMca2 transposase OrfA8e-0752.4
NC_008825:1113060:113003911300391130359321Methylibium petroleiphilum PM1, complete genomeISMca2 transposase OrfA8e-0752.4
NC_008826:517458:521176521176521496321Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceISMca2 transposase OrfA8e-0752.4
NC_007974:1135863:114414111441411144437297Ralstonia metallidurans CH34 chromosome 2, complete sequencetransposase IS3/IS9111e-0652
NC_007974:2048000:205470120547012054997297Ralstonia metallidurans CH34 chromosome 2, complete sequencetransposase IS3/IS9111e-0652
NC_007974:138176:159585159585159884300Ralstonia metallidurans CH34 chromosome 2, complete sequencetransposase IS3/IS9111e-0652
NC_015224:3820338:382524438252443825561318Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative IS3 transposase6e-0649.7