Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:2206263 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22062632207000738Sigma-24 FecIQuickGO ontologyBLASTP
22069902207952963Predicted transmembrane Transcriptional regulator anti-sigma factorQuickGO ontology
2208122220849637530S ribosomal protein S6 RpsFQuickGO ontologyBLASTP
22085472208846300Putative primosomal replication protein N PriBQuickGO ontologyBLASTP
22088492209124276Ribosomal protein S18QuickGO ontologyBLASTP
22091522209604453Ribosomal protein L9QuickGO ontologyBLASTP
220973822111231386DnaB helicaseQuickGO ontologyBLASTP
221142922125771149Putative integraserecombinaseQuickGO ontologyBLASTP
2212587221265973tRNA-ProQuickGO ontology
22130562213622567hypothetical proteinBLASTP
22150102215390381hypothetical protein
22171662217906741hypothetical proteinBLASTP
22190002219296297Putative transposase ISRSO8 orfA likeQuickGO ontologyBLASTP
22192932219973681Putative IS3 type transposase integrase orfBQuickGO ontologyBLASTP
222009222216061515Putative transposase R6 likeQuickGO ontologyBLASTP
22216032222454852Putative transposase-associated ATP- binding proteinQuickGO ontologyBLASTP
22234102224009600Putative recombinase transposition resolvase TnpRQuickGO ontologyBLASTP
22243912225098708hypothetical proteinBLASTP
22252302225604375hypothetical proteinBLASTP
22256202226171552hypothetical protein
222656022278461287hypothetical proteinBLASTP