Pre_GI: BLASTP Hits

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Query: NC_011092:76993:96402 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 96402, End: 97598, Length: 1197

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world.This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011283:1811000:1842712184271218440191308Klebsiella pneumoniae 342 chromosome, complete genomeconjugation TrbI-like protein4e-88325
NC_016612:5296076:5294782529478252960861305Klebsiella oxytoca KCTC 1686 chromosome, complete genomeconjugation TrbI-like protein2e-86319
NC_016818:1795576:1824749182474918260441296Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetype IV secretory pathway, VirB10 component4e-86318
NC_012912:1701231:1700032170003217012341203Dickeya zeae Ech1591, complete genomeconjugation TrbI family protein7e-83307
NC_014500:3097362:3154529315452931557371209Dickeya dadantii 3937 chromosome, complete genomeInner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10)8e-83307
NC_013592:2968500:3005132300513230063731242Dickeya dadantii Ech586, complete genomeconjugation TrbI family protein4e-62239
NC_016845:3448881:3476000347600034772501251Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,type IV secretory pathway VirB10 component1e-60234
NC_020181:473170:4898024898024910461245Enterobacter aerogenes EA1509E, complete genomeInner membrane protein of type IV secretion of T-DNA complex, TonB-like, VirB103e-60233
NC_009792:859228:8758598758598771031245Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-60233
NC_012731:3411161:3456877345687734581271251Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometype IV secretory pathway VirB10 component4e-60232
NC_016513:54802:6161261612628831272Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeconjugal transfer protein TrbI/VirB102e-35150
NC_010170:3908500:3923502392350239246351134Bordetella petrii, complete genometype IV secretion system protein VirB104e-30132
NC_020301:1449616:1448453144845314496191167Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genometype IV secretion system protein VirB105e-27122
NC_012751:409333:418766418766419431666Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeVirB10 conjugal transfer protein1e-24114
NC_020300:1344453:1344453134445313456161164Bartonella australis Aust/NH1, complete genometype IV secretion protein VblB106e-23108
NC_019973:5694620:5703452570345257045941143Mesorhizobium australicum WSM2073, complete genometype IV secretory pathway, VirB10 component1e-21104
NC_015675:6276357:6329163632916363303051143Mesorhizobium opportunistum WSM2075 chromosome, complete genomeconjugation TrbI family protein1e-21104
NC_014923:5765660:5774492577449257756341143Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeconjugation TrbI family protein1e-21104
NC_009254:365812:3718713718713730971227Burkholderia vietnamiensis G4 chromosome 3, complete sequenceconjugation TrbI family protein2e-21103
NC_011001:372185:3870723870723882951224Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative type IV secretion system protein VirB106e-1995.5
NC_008061:2106848:2113004211300421142271224Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceconjugation TrbI-like protein7e-1995.5
NC_017357:495213:5058855058855075881704Helicobacter pylori 908 chromosome, complete genomecag pathogenicity island protein8e-1995.1
NC_017374:498588:5050165050165066171602Helicobacter pylori 2017 chromosome, complete genomecag pathogenicity island protein8e-1995.1
NC_017381:500699:5071275071275087281602Helicobacter pylori 2018 chromosome, complete genomecag pathogenicity island protein8e-1995.1
NC_008086:513407:5202275202275241143888Helicobacter pylori HPAG1, complete genomecag pathogenicity island protein Y2e-1894
NC_017367:562918:5691785691785745715394Helicobacter pylori F57, complete genomecag pathogenicity island protein Y VirB10-like protein2e-1893.6
NC_017355:493237:4998824998825051885307Helicobacter pylori v225d chromosome, complete genomecag pathogenicity island protein3e-1893.6
NC_017358:563336:5694205694205718042385Helicobacter pylori Cuz20 chromosome, complete genomecag pathogenicity island protein (cagY, cag7)3e-1893.2
NC_017359:813500:8202648202648254235160Helicobacter pylori Sat464 chromosome, complete genomecag pathogenicity island protein (cagY, cag7)3e-1893.2
NC_010515:1124298:1130454113045411316771224Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceconjugation TrbI family protein3e-1893.2
NC_017379:505350:5117665117665173695604Helicobacter pylori Puno135 chromosome, complete genomecag pathogenicity island protein3e-1893.2
NC_011498:553525:5599645599645656695706Helicobacter pylori P12, complete genomecag pathogenicity island protein Y VirB10-like protein3e-1893.2
NC_000921:511642:5180745180745235335460Helicobacter pylori J99, complete genomecag island protein4e-1892.8
NC_014560:518582:5253015253015307815481Helicobacter pylori SJM180 chromosome, complete genomecag island protein4e-1892.8
NC_017362:506950:5132665132665190315766Helicobacter pylori Lithuania75 chromosome, complete genomecag pathogenicity island protein (cag7, cagY)4e-1892.8
NC_017354:848500:8552788552788609745697Helicobacter pylori 52 chromosome, complete genomeconjugation TrbI family protein4e-1892.8
NC_017365:848500:8552608552608610405781Helicobacter pylori F30, complete genomecag pathogenicity island protein4e-1892.8
NC_017378:502806:5088765088765145515676Helicobacter pylori Puno120 chromosome, complete genomecag pathogenicity island protein (cag7)4e-1892.8
NC_017366:535188:5414455414455474536009Helicobacter pylori F32, complete genomecag pathogenicity island protein Y VirB10-like protein4e-1892.8
NC_017368:852490:8590688590688644585391Helicobacter pylori F16, complete genomecag island protein4e-1892.8
NC_017371:530673:5371025371025429185817Helicobacter pylori Gambia94/24 chromosome, complete genomecag pathogenicity island protein Y VirB10-like protein4e-1892.8
NC_017372:855384:8620738620738673525280Helicobacter pylori India7 chromosome, complete genomecag pathogenicity island protein (cag7)4e-1892.8
NC_017360:1052473:1059362105936210647555394Helicobacter pylori 35A chromosome, complete genomecag pathogenicity island protein3e-1892.8
NC_014256:683384:6900696900696955345466Helicobacter pylori B8 chromosome, complete genomecag pathogenicity island protein Y6e-1892.4
NC_010698:819912:8326658326658382295565Helicobacter pylori Shi470, complete genomecag pathogenicity island protein (cag7)5e-1892.4
NC_000915:547783:5542065542065599895784Helicobacter pylori 26695, complete genomecag pathogenicity island protein (cag7)5e-1892.4
NC_018939:547793:5542165542165599995784Helicobacter pylori 26695 chromosome, complete genomecag pathogenicity island protein (cag7)5e-1892.4
NC_017376:538000:5458135458135512065394Helicobacter pylori SNT49 chromosome, complete genomecag pathogenicity island protein (cag7)7e-1892
NC_017063:800156:8070168070168125865571Helicobacter pylori ELS37 chromosome, complete genomecag pathogenicity island protein (cag7)8e-1891.7
NC_017375:872478:8809778809778844533477Helicobacter pylori 83 chromosome, complete genomeDC-EC Repeat superfamily protein2e-1790.9
NC_016814:18000:3574535745369561212Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceType IV secretion system protein virB101e-1480.9
NC_010943:3034366:3048752304875230500051254Stenotrophomonas maltophilia K279a, complete genomeputative putative bacterial secretion system protein2e-1377
NC_010688:1908012:1933152193315219343211170Xanthomonas campestris pv. campestris, complete genometype IV secretion system putative channel component VirB46e-1375.5
NC_003919:3060484:3084400308440030855691170Xanthomonas axonopodis pv. citri str. 306, complete genomeVirB10 protein7e-1375.5
NC_015947:2752450:2768815276881527700861272Burkholderia sp. JV3 chromosome, complete genomeconjugation TrbI family protein9e-1375.1
NC_011071:2733438:2750462275046227517151254Stenotrophomonas maltophilia R551-3, complete genomeconjugation TrbI family protein9e-1375.1
NC_003902:2933121:2948624294862429498051182Xanthomonas campestris pv. campestris str. ATCC 33913, completeVirB10 protein3e-1273.6
NC_007086:1936505:1960414196041419615951182Xanthomonas campestris pv. campestris str. 8004, complete genomeVirB10 protein3e-1273.6
NC_017271:2935643:2969405296940529706671263Xanthomonas campestris pv. raphani 756C chromosome, completeVirB10 protein7e-1272
NC_005090:1033746:1050597105059710517001104Wolinella succinogenes DSM 1740, complete genomeCOMB32e-1170.5
NC_013722:2150882:2162487216248721636621176Xanthomonas albilineans, complete genomeputative virb10 protein7e-1168.6
NC_010698:870312:9022439022439034781236Helicobacter pylori Shi470, complete genomeComB3 protein1e-0964.7
NC_011333:1040192:1056088105608810573231236Helicobacter pylori G27 chromosome, complete genomecompetence protein1e-0964.7
NC_011498:448000:4809874809874822521266Helicobacter pylori P12, complete genomeVirB10 type IV secretion protein2e-0964.3
NC_017371:1030148:1039276103927610405231248Helicobacter pylori Gambia94/24 chromosome, complete genomecompetence protein2e-0964.3
NC_017379:1035464:1048353104835310496181266Helicobacter pylori Puno135 chromosome, complete genomeVirB10 type IV secretion protein2e-0964.3
NC_017361:930280:9621619621619633961236Helicobacter pylori SouthAfrica7 chromosome, complete genomecompetence protein1e-0964.3
NC_017376:57500:8901489014902491236Helicobacter pylori SNT49 chromosome, complete genomecompetence protein2e-0963.9
NC_014555:1526775:1547587154758715488521266Helicobacter pylori PeCan4 chromosome, complete genomeVirB10 type IV secretion protein2e-0963.9
NC_017361:1528239:1539861153986115411231263Helicobacter pylori SouthAfrica7 chromosome, complete genomeVirB10 type IV secretion protein2e-0963.9
NC_017367:278916:2946922946922959271236Helicobacter pylori F57, complete genomeComB3 protein4e-0963.2
NC_017358:220900:2382162382162394511236Helicobacter pylori Cuz20 chromosome, complete genomecompetence protein4e-0962.8
NC_006371:1743982:1756319175631917574551137Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein TrbI6e-0962.4
NC_007950:206474:2077542077542090221269Polaromonas sp. JS666 plasmid 2, complete sequenceconjugation TrbI-like protein2e-0860.5
NC_015850:110364:1668211668211681371317Acidithiobacillus caldus SM-1 chromosome, complete genomeconjugation TrbI family protein1e-0758.2
NC_009720:4406991:4419880441988044211241245Xanthobacter autotrophicus Py2, complete genomeconjugation TrbI family protein3e-0756.6
NC_016616:2699350:2740060274006027413851326Dechlorosoma suillum PS chromosome, complete genometype IV secretory pathway, VirB10 component1e-0654.7
NC_014834:614890:6214596214596226701212Rhodopseudomonas palustris DX-1 chromosome, complete genomeconjugation TrbI family protein2e-0654.3
NC_016929:825413:8398688398688413161449Rickettsia canadensis str. CA410 chromosome, complete genomehypothetical protein3e-0653.5
NC_017063:834674:8455588455588467661209Helicobacter pylori ELS37 chromosome, complete genomeVirB10 type IV secretion protein7e-0652.4
NC_017371:1470582:1512192151219215134001209Helicobacter pylori Gambia94/24 chromosome, complete genomeVirB10 type IV secretion protein6e-0652.4
NC_014256:485969:5179145179145191221209Helicobacter pylori B8 chromosome, complete genometype IV secretion system protein VirB106e-0652.4
NC_011498:1391788:1402591140259114038291239Helicobacter pylori P12, complete genomeVirB10 type IV secretion protein6e-0652.4
NC_017375:77142:9799997999992011203Helicobacter pylori 83 chromosome, complete genomeconjugal transfer protein TrbI7e-0652
NC_017372:748097:7891127891127903141203Helicobacter pylori India7 chromosome, complete genometype IV secretion system protein VirB107e-0652
NC_015593:1587684:1598790159879015998811092Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeconjugation TrbI family protein8e-0652
NC_009879:835227:8497528497528512001449Rickettsia canadensis str. McKiel, complete genomehypothetical protein9e-0651.6