Pre_GI Gene

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Host: NC_017381 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017381:500699 Helicobacter pylori 2018 chromosome, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
500047500706660cag pathogenicity island proteinQuickGO ontologyBLASTP
5006995021441446cag pathogenicity island proteinQuickGO ontologyBLASTP
502154502663510cagGamma proteinQuickGO ontologyBLASTP
502944503066123hypothetical proteinBLASTP
5031405053862247Type IV secretion system proteinQuickGO ontologyBLASTP
505395506387993ATPaseQuickGO ontologyBLASTP
506392506991600cag pathogenicity island protein ZQuickGO ontologyBLASTP
5071275087281602cag pathogenicity island proteinQuickGO ontologyBLASTP
508787509452666cag pathogenicity island proteinQuickGO ontologyBLASTP
509590509976387cag pathogenicity island proteinQuickGO ontologyBLASTP
509994510176183cag pathogenicity island proteinQuickGO ontologyBLASTP
5101915116391449cag island proteinQuickGO ontologyBLASTP
5118095134161608cag pathogenicity island proteinQuickGO ontologyBLASTP
513421514179759inner membrane proteinQuickGO ontologyBLASTP
514560515216657cag pathogenicity island proteinQuickGO ontologyBLASTP
515252516094843cag pathogenicity island proteinQuickGO ontologyBLASTP
516276516875600cag pathogenicity island proteinQuickGO ontologyBLASTP
517300517503204cag pathogenicity island proteinQuickGO ontologyBLASTP
518693518830138hypothetical proteinBLASTP
5190655201951131cag island proteinQuickGO ontologyBLASTP