Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013929: Streptomyces scabiei 87.22 chromosome, complete genome

NCBI: NC_013929

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1109503072419775Island text1.6615213.837517.4199Neighbours11BLASTN+10950.gbk
2665008451718018Island text1.5137315.345323.523Neighbours11BLASTN+66500.gbk
325763527659918965Island text1.7096614.27539.48349Neighbours11BLASTN+IslandViewer 257635.gbk
41119384*115872839345Island text1.6640514.164613.9826Neighbours11BLASTN+1119384.gbk
51537980156133423355Island text1.52614.415122.7007Neighbours11BLASTN+1537980.gbk
61584906160415419249Island text1.5236314.807310.7626Neighbours11BLASTN+1584906.gbk
71611940166362751688Island text1.7993914.6813.9121Neighbours11BLASTN+IslandViewer 1611940.gbk
81670402169078920388Island text1.5303515.533812.7391Neighbours11BLASTN1670402.gbk
91799594182380024207Island text1.6653514.542817.697Neighbours11BLASTNIslandViewer 1799594.gbk
102375613*246388888276Island text1.9549616.214519.9696Neighbours11BLASTN+IslandViewer 2375613.gbk
112536255256947333219Island text1.5661215.013627.1325Neighbours11BLASTNIslandViewer 2536255.gbk
122583849260715223304Island text1.7088914.266221.8967Neighbours11BLASTN+2583849.gbk
132696648*271508418437Island text1.709714.55816.0616Neighbours11BLASTN+2696648.gbk
143206688322757020883Island text3.6585619.43827.5723Neighbours11BLASTN+3206688.gbk
153299736*334892549190Island text1.8153414.78915.4465Neighbours11BLASTN+IslandViewer 3299736.gbk
163564500358750523006Island text3.1942220.653719.8729Neighbours8BLASTN+3564500.gbk
173600343364866548323Island text1.5771318.188620.5293Neighbours11BLASTN+IslandViewer 3600343.gbk
183660321368409923779Island text2.1629715.913910.6339Neighbours11BLASTNIslandViewer 3660321.gbk
193702994372119218199Island text1.803116.272121.1817Neighbours11BLASTN+3702994.gbk
203722867376989847032Island text1.6404913.859826.4923Neighbours11BLASTN+IslandViewer 3722867.gbk
213953046397702823983Island text2.1775116.196723.111Neighbours11BLASTN+3953046.gbk
223986272400670520434Island text1.3730714.524610.8113Neighbours11BLASTN+3986272.gbk
234136742*416608629345Island text1.630414.877210.9321Neighbours8BLASTN4136742.gbk
244186840*420835721518Island text1.6231518.569323.5327Neighbours11BLASTN4186840.gbk
254549988*458845438467Island text1.5228118.805527.7592Neighbours11BLASTN+IslandViewer 4549988.gbk
264614000463277618777Island text4.2666420.434529.9545Neighbours11BLASTN4614000.gbk
274807910482717319264Island text2.0911815.04118.0534Neighbours11BLASTN+4807910.gbk
284927380494756920190Island text2.0587214.475914.4536Neighbours8BLASTN+4927380.gbk
295097389511695719569Island text1.7752415.26838.73736Neighbours11BLASTN5097389.gbk
305135285*517209936815Island text1.4611114.469820.776Neighbours11BLASTN+5135285.gbk
315248000*527009922100Island text1.5742414.132412.9857Neighbours11BLASTN+5248000.gbk
325431954545827726324Island text1.679215.430611.2787Neighbours11BLASTN+5431954.gbk
335850599*587058819990Island text2.4428214.220620.3496Neighbours11BLASTN+5850599.gbk
345927935594809920165Island text1.8015215.92422.1259Neighbours11BLASTN+IslandViewer 5927935.gbk
355952380597195819579Island text4.6567621.136931.9458Neighbours11BLASTN+5952380.gbk
366008072*603332625255Island text1.6911614.365311.195Neighbours11BLASTN+6008072.gbk
376251989627309921111Island text2.0274615.320918.555Neighbours11BLASTN+IslandViewer 6251989.gbk
386343000636199418995Island text1.4926114.846823.6844Neighbours11BLASTNIslandViewer 6343000.gbk
396371019639444923431Island text1.3564214.214522.3535Neighbours11BLASTN6371019.gbk
406526745655093924195Island text4.2675920.575629.3645Neighbours11BLASTN+6526745.gbk
416663889*668677022882Island text2.1167715.128516.7819Neighbours11BLASTN+6663889.gbk
426923884*694159917716Island text2.1335514.968412.6386Neighbours11BLASTN+6923884.gbk
437117326714054523220Island text1.4157115.673618.7964Neighbours11BLASTN+7117326.gbk
447162030718234320314Island text1.3730614.883313.4365Neighbours11+7162030.gbk
457278414731192433511Island text1.5388415.418.9487Neighbours11BLASTNIslandViewer 7278414.gbk
467606749*763012023372Island text1.6102914.828614.1004Neighbours11BLASTN+IslandViewer 7606749.gbk
477663631768646422834Island text1.4904417.065911.2255Neighbours11BLASTN+IslandViewer 7663631.gbk
488106492812803621545Island text1.9751715.179127.2347Neighbours11BLASTN8106492.gbk
498474195851568541491Island text2.2363114.986717.6406Neighbours11BLASTN+IslandViewer 8474195.gbk
508525000854259917600Island text1.5533816.954628.3274Neighbours11BLASTN+8525000.gbk
519038500905657218073Island text1.6839313.250926.7268Neighbours11BLASTN+9038500.gbk
529450747947067019924Island text1.7534213.725114.9957Neighbours11BLASTN+9450747.gbk
53101096801012807218393Island text1.578414.718227.0536Neighbours11BLASTN+IslandViewer 10109680.gbk
54101339021015549921598Island text1.6150813.980418.6746Neighbours11BLASTN10133902.gbk