Pre_GI Gene

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Host: NC_013929 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013929:6008072 Streptomyces scabiei 87.22 chromosome, complete genome

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
600807260108042733phosphoenolpyruvate carboxylaseQuickGO ontologyBLASTP
60109946011515522hypothetical proteinBLASTP
60116066012208603aminoacyl-tRNA hydrolaseQuickGO ontologyBLASTP
6012281601287759750S ribosomal protein L25QuickGO ontologyBLASTP
60130536014027975ribose-phosphate pyrophosphokinaseQuickGO ontologyBLASTP
601413860155861449nucleotidyltransferaseQuickGO ontologyBLASTP
601610960174521344two-component system sensor kinaseQuickGO ontologyBLASTP
60175256018019495hypothetical proteinBLASTP
60182436018743501hypothetical proteinBLASTP
601906660200761011hypothetical proteinBLASTP
602008460228312748hypothetical proteinBLASTP
60230766023951876hypothetical proteinBLASTP
602420560258631659sodiumsolute symporterQuickGO ontologyBLASTP
60258606026327468hypothetical protein
602649860280451548transporterQuickGO ontologyBLASTP
60284676029255789ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
602925260318312580ABC transporterQuickGO ontologyBLASTP
603193260333261395hypothetical proteinBLASTP