Pre_GI Gene

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Host: NC_013929 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013929:4186840 Streptomyces scabiei 87.22 chromosome, complete genome

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
418684041907393900DNA-directed RNA polymerase subunit betaQuickGO ontologyBLASTP
419084341943283486DNA-directed RNA polymerase subunit betaQuickGO ontologyBLASTP
4194975419535538150S ribosomal protein L7L12QuickGO ontologyBLASTP
4195478419600853150S ribosomal protein L10QuickGO ontologyBLASTP
41963014197233933lipoproteinQuickGO ontologyBLASTP
4197461419818672650S ribosomal protein L1QuickGO ontologyBLASTP
4198293419872743550S ribosomal protein L11QuickGO ontologyBLASTP
41989074199791885transcription antitermination proteinQuickGO ontologyBLASTP
41998694200159291preprotein translocase subunit SecEQuickGO ontologyBLASTP
4200274420034673tRNA-TrpQuickGO ontologyBLASTP
420059842018241227aspartate aminotransferaseQuickGO ontologyBLASTP
420194542029881044adenosine deaminaseQuickGO ontologyBLASTP
420299842040531056UDP-N-acetylmuramate dehydrogenaseQuickGO ontologyBLASTP
42041284204556429oxidoreductaseQuickGO ontologyBLASTP
42045644205016453hypothetical proteinBLASTP
4205166420533016550S ribosomal protein L33QuickGO ontologyBLASTP
4205422420549473tRNA-MetQuickGO ontologyBLASTP
4205541420561373tRNA-ThrQuickGO ontologyBLASTP
420592042071971278hydrolaseQuickGO ontologyBLASTP
420732942083571029hypothetical proteinBLASTP