Pre_GI: BLASTN Hits

Some Help

Query: NC_013929:5952380 Streptomyces scabiei 87.22 chromosome, complete genome

Start: 5952380, End: 5971958, Length: 19579

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:5042283*5042283508756145279Streptomyces coelicolor A3(2), complete genome0835BLASTN svgBLASTP svg
NC_003155:44415594441559446530823750Streptomyces avermitilis MA-4680, complete genome4e-162579BLASTN svgBLASTP svg
NC_018750:3249756*3249756327318823433Streptomyces venezuelae ATCC 10712, complete genome8e-65256BLASTN svgBLASTP svg
NC_015656:50847675084767510643621670Frankia symbiont of Datisca glomerata chromosome, complete genome6e-47196BLASTN svgBLASTP svg
NC_014318:6817860*6817860684509927240Amycolatopsis mediterranei U32 chromosome, complete genome6e-47196BLASTN svgBLASTP svg
NC_018750:43330644333064436046827405Streptomyces venezuelae ATCC 10712, complete genome1e-44188BLASTN svgBLASTP svg
NC_003155:45920004592000463614444145Streptomyces avermitilis MA-4680, complete genome1e-35159BLASTN svgBLASTP svg
NC_003155:49066394906639493178025142Streptomyces avermitilis MA-4680, complete genome5e-35157BLASTN svgBLASTP svg
NC_018750:21189072118907214335524449Streptomyces venezuelae ATCC 10712, complete genome8e-34153BLASTN svgBLASTP svg
NC_010572:41814034181403420609924697Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-30141BLASTN svgBLASTP svg
NC_010572:3363830*3363830342121457385Streptomyces griseus subsp. griseus NBRC 13350, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015957:10403997*104039971042720123205Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_003155:5163382*5163382518745824077Streptomyces avermitilis MA-4680, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008278:296526*29652632302726502Frankia alni ACN14a, complete genome9e-0660BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome9e-0660BLASTN svgBLASTP svg