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Query: NC_013929:6343000 Streptomyces scabiei 87.22 chromosome, complete genome

Start: 6343000, End: 6361994, Length: 18995

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003903:16782516782520035432530Streptomyces coelicolor A3(2) plasmid SCP1, complete sequence4e-20107BLASTN svgBLASTP svg
NC_014318:10070730*100707301009932828599Amycolatopsis mediterranei U32 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_018681:71910087191008721671325706Nocardia brasiliensis ATCC 700358 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_015957:336500*33650036213525636Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg