Pre_GI: BLASTN Hits

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Query: NC_016822:3923908 Shigella sonnei 53G, complete genome

Start: 3923908, End: 3945884, Length: 21977

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010473:37225713722571375929536725Escherichia coli str. K-12 substr. DH10B, complete genome026070BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome026070BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome024070BLASTN svgBLASTP svg
CP002185:38224703822470385930636837Escherichia coli W, complete genome022070BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome021470BLASTN svgBLASTP svg
NC_011751:40745864074586409524320658Escherichia coli UMN026 chromosome, complete genome020840BLASTN svgBLASTP svg
NC_010498:38384193838419386683628418Escherichia coli SMS-3-5, complete genome020750BLASTN svgBLASTP svg
NC_007384:38970003897000391653419535Shigella sonnei Ss046, complete genome020180BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome017860BLASTN svgBLASTP svg
NC_004741:41605004160500418981229313Shigella flexneri 2a str. 2457T, complete genome017860BLASTN svgBLASTP svg
NC_008258:35505003550500357858028081Shigella flexneri 5 str. 8401, complete genome017750BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome015460BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome015460BLASTN svgBLASTP svg
NC_010468:23100023100025334622347Escherichia coli ATCC 8739, complete genome013780BLASTN svgBLASTP svg
NC_011748:39585723958572397962121050Escherichia coli 55989, complete genome010950BLASTN svgBLASTP svg
CU928145:39585723958572397962121050Escherichia coli 55989 chromosome, complete genome010950BLASTN svgBLASTP svg
NC_004741:41320564132056415578223727Shigella flexneri 2a str. 2457T, complete genome09959BLASTN svgBLASTP svg
CP002516:24676724676726745320687Escherichia coli KO11, complete genome08318BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome08231BLASTN svgBLASTP svg
NC_008258:35815833581583360816926587Shigella flexneri 5 str. 8401, complete genome04310BLASTN svgBLASTP svg
CU928160:37090813709081373009921019Escherichia coli IAI1 chromosome, complete genome04272BLASTN svgBLASTP svg
NC_009801:39569173956917397533818422Escherichia coli E24377A, complete genome04264BLASTN svgBLASTP svg
AC_000091:39768883976888399503018143Escherichia coli W3110 DNA, complete genome04201BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome02563BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome02547BLASTN svgBLASTP svg
NC_006905:37173063717306374009922794Salmonella enterica subsp. enterica serovar Choleraesuis str02434BLASTN svgBLASTP svg
NC_014121:50000695000069503057530507Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02395BLASTN svgBLASTP svg
NC_009778:41880004188000423044042441Enterobacter sakazakii ATCC BAA-894, complete genome01709BLASTN svgBLASTP svg
NC_010634:44637274463727449917835452Yersinia pseudotuberculosis PB1/+, complete genome9e-68266BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome5e-60240BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome5e-60240BLASTN svgBLASTP svg
AC_000091:3258377*3258377328148023104Escherichia coli W3110 DNA, complete genome1e-39172BLASTN svgBLASTP svg
CP002185:3475991*3475991350005224062Escherichia coli W, complete genome1e-39172BLASTN svgBLASTP svg
CP002516:613462*61346263169018229Escherichia coli KO11, complete genome1e-39172BLASTN svgBLASTP svg
CU928160:3344746*3344746336309918354Escherichia coli IAI1 chromosome, complete genome1e-39172BLASTN svgBLASTP svg
NC_000913:3256307*3256307327821621910Escherichia coli K12, complete genome1e-39172BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome1e-39172BLASTN svgBLASTP svg
NC_009800:3307123*3307123332547318351Escherichia coli HS, complete genome1e-39172BLASTN svgBLASTP svg
NC_009801:35950013595001361359918599Escherichia coli E24377A, complete genome1e-39172BLASTN svgBLASTP svg
NC_010468:61381261381263388120070Escherichia coli ATCC 8739, complete genome1e-39172BLASTN svgBLASTP svg
NC_010473:3354052*3354052337759923548Escherichia coli str. K-12 substr. DH10B, complete genome1e-39172BLASTN svgBLASTP svg
NC_004337:32497913249791327283723047Shigella flexneri 2a str. 301, complete genome2e-37165BLASTN svgBLASTP svg
NC_004741:3240909*3240909326236621458Shigella flexneri 2a str. 2457T, complete genome2e-37165BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome2e-37165BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome2e-37165BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome9e-37163BLASTN svgBLASTP svg
NC_009348:47974479747089422921Aeromonas salmonicida subsp. salmonicida A449, complete genome9e-37163BLASTN svgBLASTP svg
NC_010814:36739833673983369691022928Geobacter lovleyi SZ, complete genome4e-33151BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome6e-32147BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-32147BLASTN svgBLASTP svg
NC_002505:16853216853220059932068Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete1e-29139BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome2e-28135BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome3e-27131BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome5e-26127BLASTN svgBLASTP svg
CU928145:3608917*3608917363276823852Escherichia coli 55989 chromosome, complete genome8e-25123BLASTN svgBLASTP svg
NC_011748:3608917*3608917363276823852Escherichia coli 55989, complete genome8e-25123BLASTN svgBLASTP svg
NC_015633:33800033800035668318684Vibrio anguillarum 775 chromosome chromosome I, complete sequence5e-23117BLASTN svgBLASTP svg
NC_011751:39842363984236400841624181Escherichia coli UMN026 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome2e-22115BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome2e-22115BLASTN svgBLASTP svg
NC_010473:4564590*4564590458823123642Escherichia coli str. K-12 substr. DH10B, complete genome3e-21111BLASTN svgBLASTP svg
NC_000913:4462782*4462782448642323642Escherichia coli K12, complete genome3e-21111BLASTN svgBLASTP svg
AC_000091:4472000*4472000449474322744Escherichia coli W3110 DNA, complete genome3e-21111BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome2e-19105BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome8e-19103BLASTN svgBLASTP svg
NC_007973:18217531821753184776126009Ralstonia metallidurans CH34 chromosome 1, complete sequence3e-18101BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009348:3819271*3819271384615626886Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome7e-1693.7BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome2e-1385.7BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome2e-1385.7BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008570:4009762*4009762403215322392Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013416:16493*164933535418862Aggregatibacter actinomycetemcomitans D11S-1, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008392:10291341029134108217253039Burkholderia cepacia AMMD chromosome 3, complete sequence4e-1177.8BLASTN svgBLASTP svg
NC_007946:25874725874728282624080Escherichia coli UTI89, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008253:25705925705928215125093Escherichia coli 536, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008563:258725*25872528280524081Escherichia coli APEC O1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010552:752007*75200777809926093Burkholderia ambifaria MC40-6 chromosome 2, complete sequence2e-1075.8BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_007946:3855445*3855445387497119527Escherichia coli UTI89, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008563:28713628713630584318708Escherichia coli APEC O1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_008563:3888232*3888232390776619535Escherichia coli APEC O1, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_013416:875758*87575890109925342Aggregatibacter actinomycetemcomitans D11S-1, complete genome7e-1073.8BLASTN svgBLASTP svg
CU928160:21559472155947218736531419Escherichia coli IAI1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
CU928145:23244952324495235493330439Escherichia coli 55989 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
CP002516:18464921846492187615129660Escherichia coli KO11, complete genome3e-0971.9BLASTN svgBLASTP svg
CP002185:22337322233732226508731356Escherichia coli W, complete genome3e-0971.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0971.9BLASTN svgBLASTP svg
AP010958:25040722504072253559331522Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_004431:23839012383901241472630826Escherichia coli CFT073, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007613:86408486408489531131228Shigella boydii Sb227, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007946:22318722231872226061428743Escherichia coli UTI89, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008253:21341102134110216406229953Escherichia coli 536, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_009801:22761312276131230753131401Escherichia coli E24377A, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010658:10901041090104112159931496Shigella boydii CDC 3083-94, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011748:23244952324495235493330439Escherichia coli 55989, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011751:23958822395882242503029149Escherichia coli UMN026 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
AP010958:92293792293795098628050Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010498:41669034166903419347126569Escherichia coli SMS-3-5, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010557:67965667965674320963554Burkholderia ambifaria MC40-6 chromosome 3, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_011750:44905734490573451714226570Escherichia coli IAI39 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004431:48676484867648489054022893Escherichia coli CFT073, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002695:51648195164819518468719869Escherichia coli O157:H7 str. Sakai, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002655:51948045194804521379718994Escherichia coli O157:H7 EDL933, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_000913:43074714307471432826120791Escherichia coli K12, complete genome4e-0867.9BLASTN svgBLASTP svg
CU928160:43951564395156441536720212Escherichia coli IAI1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
CP002516:44312354431235445210920875Escherichia coli KO11, complete genome4e-0867.9BLASTN svgBLASTP svg
CP002185:45661504566150459009923950Escherichia coli W, complete genome4e-0867.9BLASTN svgBLASTP svg
AP010958:50221965022196504082118626Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-0867.9BLASTN svgBLASTP svg
AC_000091:43131674313167433668223516Escherichia coli W3110 DNA, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007384:45300004530000455031620317Shigella sonnei Ss046, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015572:1974000*1974000199616522166Methylomonas methanica MC09 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014315:28340002834000285616822169Nitrosococcus watsoni C-113 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010473:44094924409492443038920898Escherichia coli str. K-12 substr. DH10B, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010468:43051054305105432709121987Escherichia coli ATCC 8739, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009997:51882215188221522795839738Shewanella baltica OS195, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009801:46430004643000466340420405Escherichia coli E24377A, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009800:43322294332229435609923871Escherichia coli HS, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008563:46560004656000467809922100Escherichia coli APEC O1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008253:45419154541915456410622192Escherichia coli 536, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007606:19998701999870202709927230Shigella dysenteriae Sd197, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012691:2614603*26146032727599112997Tolumonas auensis DSM 9187, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013960:45249345249347193019438Nitrosococcus halophilus Nc4 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014924:2399524*2399524243305533532Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
AC_000091:20966722096672212665729986Escherichia coli W3110 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_000913:20925592092559212109928541Escherichia coli K12, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010473:21835672183567221209928533Escherichia coli str. K-12 substr. DH10B, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002695:46789454678945470459925655Escherichia coli O157:H7 str. Sakai, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013416:386301*38630140838122081Aggregatibacter actinomycetemcomitans D11S-1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015424:748785*74878577389925115Aeromonas veronii B565 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015566:23287712328771235231223542Serratia sp. AS12 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015567:23287822328782235384725066Serratia sp. AS9 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002655:47479264747926477356525640Escherichia coli O157:H7 EDL933, complete genome3e-0661.9BLASTN svgBLASTP svg