Pre_GI Gene

Some Help

Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:3685651 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
368565136876932043oligopeptidase AQuickGO ontologyBLASTP
36878963688738843DNA utilization protein YhiRQuickGO ontologyBLASTP
368881036901621353glutathione-disulfide reductaseQuickGO ontologyBLASTP
36902163690365150hypothetical proteinBLASTP
36906133690774162hypothetical protein
36910393691392354arsenical resistance operon repressorQuickGO ontologyBLASTP
369144636927351290arsenical pump membrane proteinQuickGO ontologyBLASTP
36927483693173426arsenate reductaseQuickGO ontologyBLASTP
36932283693392165hypothetical protein
369380236949171116hypothetical proteinBLASTP
36952723695838567outer membrane lipoprotein Slp familyQuickGO ontologyBLASTP
36959943696524531transcriptional regulator DctRQuickGO ontologyBLASTP
36965663697213648putative Mg2 transporter-C MgtC family proteinQuickGO ontologyBLASTP
36972773697615339HdeB proteinQuickGO ontologyBLASTP
36977193698051333hns-dependent expression protein A HdeAQuickGO ontologyBLASTP
36983063698878573putative HdeD proteinQuickGO ontologyBLASTP
36996773700204528transcriptional regulator GadEQuickGO ontologyBLASTP
370054337017001158multidrug resistance protein MdtEQuickGO ontologyBLASTP
370172537048383114multidrug resistance protein MdtFQuickGO ontologyBLASTP
37052013705929729transcriptional regulator GadWQuickGO ontologyBLASTP
37060023706109108hypothetical protein
37061723706285114IS183 RNAQuickGO ontology
37062973707121825transcriptional regulator GadXQuickGO ontologyBLASTP
370749137088911401glutamate decarboxylase GadAQuickGO ontologyBLASTP