Pre_GI Gene

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Host: NC_002505 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_002505:168532 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1685321702471716peptide ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
1702671718951629peptide ABC transporter periplasmic peptide-binding proteinQuickGO ontologyBLASTP
1719991730271029peptide ABC transporter permease proteinQuickGO ontologyBLASTP
173030173968939peptide ABC transporter permease proteinQuickGO ontologyBLASTP
174143175090948hypothetical proteinBLASTP
1753431769411599deoxycytidylate deaminase-related proteinQuickGO ontologyBLASTP
177450177758309transcriptional regulator putativeQuickGO ontologyBLASTP
177861178424564hypothetical proteinBLASTP
1793381804051068patatin-related proteinQuickGO ontologyBLASTP
1804191817291311hypothetical proteinBLASTP
1817321834861755hypothetical proteinBLASTP
183476183946471hypothetical proteinBLASTP
183957184388432hypothetical proteinBLASTP
1843601864712112hypothetical proteinBLASTP
1864811881691689hypothetical proteinBLASTP
1881661893801215transposase putativeQuickGO ontologyBLASTP
1894571908211365glutathione reductaseQuickGO ontologyBLASTP
190915191754840hypothetical proteinBLASTP
1920341940762043oligopeptidase AQuickGO ontologyBLASTP
19410119419999hypothetical proteinBLASTP
1942141963852172DNA helicase IIQuickGO ontologyBLASTP
197130197798669hypothetical proteinBLASTP
197873198685813transcriptional regulator AraCXylS familyQuickGO ontologyBLASTP
19872219881796hypothetical protein
1988332005991767gamma-glutamyltranspeptidaseQuickGO ontologyBLASTP