Pre_GI Gene

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Host: NC_009800 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:3787320 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
378732037891641845selenocysteine-specific translation elongation factorQuickGO ontologyBLASTP
378916137905521392L-seryl-tRNA selenium transferaseQuickGO ontologyBLASTP
37906503791258609glutathione S-transferaseQuickGO ontologyBLASTP
37912573791400144hypothetical proteinBLASTP
37928683793710843PBS lyase HEAT-like repeat proteinQuickGO ontologyBLASTP
37937523794696945Rhs family proteinQuickGO ontologyBLASTP
379677337979091137membrane fusion protein MFP TC 8A1 familyQuickGO ontologyBLASTP
37979123798274363hypothetical proteinBLASTP
3798300379839293hypothetical proteinBLASTP
379881138007241914PTS system mannitol-specific IIABC componentQuickGO ontologyBLASTP
380095438021021149mannitol-1-phosphate 5-dehydrogenaseQuickGO ontologyBLASTP
38021023802689588mannitol operon repressorQuickGO ontologyBLASTP
38027013802910210hypothetical proteinBLASTP
38031953803557363hypothetical proteinBLASTP
3803643380373593hypothetical proteinBLASTP
38038873804030144hypothetical protein
38041013804784684putative lipoproteinQuickGO ontologyBLASTP
380482838098525025putative haemagglutininQuickGO ontologyBLASTP