Pre_GI: BLASTP Hits

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Query: NC_010102:2862178:2864278 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 2864278, End: 2864544, Length: 267

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:2870428:288471228847122884978267Salmonella enterica subsp. enterica serovar Newport str. SL254,phage DNA binding protein3e-39160
NC_016845:575123:589780589780590046267Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage DNA binding protein4e-38156
NC_021066:5342127:535911053591105359376267Raoultella ornithinolytica B6, complete genomephage DNA binding protein1e-37155
NC_006511:4465495:446677144667714467101331Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-38155
NC_011147:4460726:446200144620014462267267Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-38155
NC_016857:2871689:289653928965392896805267Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage DNA binding protein5e-38155
NC_009436:3367194:338079433807943381060267Enterobacter sp. 638, complete genomephage transcriptional regulator, AlpA1e-34144
NC_014121:677799:691347691347691613267Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage transcriptional regulator, AlpA3e-34143
NC_013508:3593000:360746636074663607687222Edwardsiella tarda EIB202, complete genomehypothetical protein6e-34142
NC_004631:4661000:467373846737384674061324Salmonella enterica subsp. enterica serovar Typhi Ty2, completephage DNA binding protein2e-33141
NC_003198:4676536:469084946908494691172324Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage DNA binding protein2e-33141
NC_013941:338121:359163359163359423261Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephage DNA binding protein5e-29126
NC_013008:306953:323381323381323641261Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeregulatory protein encoded in prophage CP-933I5e-29126
NC_011353:305820:322069322069322329261Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage DNA binding protein5e-29126
NC_002655:301940:318190318190318450261Escherichia coli O157:H7 EDL933, complete genomeputative regulatory protein encoded in prophage CP-933I5e-29126
NC_002695:301939:318189318189318449261Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA binding protein5e-29126
NC_011080:4703266:471759947175994717859261Salmonella enterica subsp. enterica serovar Newport str. SL254,phage transcriptional regulator, AlpA2e-28124
NC_010498:4072681:408781140878114088077267Escherichia coli SMS-3-5, complete genomeAlpA family transcriptional regulator5e-28122
NC_010468:1130000:115080511508051151071267Escherichia coli ATCC 8739, complete genomephage transcriptional regulator, AlpA5e-28122
NC_007613:4217557:422168542216854221951267Shigella boydii Sb227, complete genomehypothetical protein5e-28122
NC_011740:448000:452630452630452896267Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein of bacteriophage origin, putative COG3311, putative DNA binding5e-28122
NC_013361:4959323:495991949599194960185267Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA binding transcriptional regulator5e-28122
NC_010468:49074:496614966149927267Escherichia coli ATCC 8739, complete genomephage transcriptional regulator, AlpA1e-27121
NC_014306:4901390:494030849403084940574267Erwinia billingiae Eb661, complete genomePhage transcriptional regulator, AlpA-family5e-25112
NC_014306:4376012:441108144110814411347267Erwinia billingiae Eb661, complete genomePhage transcriptional regulator, AlpA-family2e-23107
NC_020211:996497:100966210096621009928267Serratia marcescens WW4, complete genomehypothetical protein9e-1992.4
NC_009778:567000:596545596545596727183Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1890.1
NC_012917:833721:838409838409838669261Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA2e-1787.4
NC_012917:3684840:368998636899863690246261Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA5e-1786.3
NC_005085:659378:678312678312678530219Chromobacterium violaceum ATCC 12472, complete genomeprobable prophage regulatory protein8e-1682.4
NC_007347:2421942:242194224219422422205264Ralstonia eutropha JMP134 chromosome 1, complete sequenceProphage CP4-57 regulatory2e-1373.9
NC_012856:3270709:329098632909863291246261Ralstonia pickettii 12D chromosome 1, complete genomephage transcriptional regulator, AlpA5e-1373.2
NC_003295:998000:101150510115051011771267Ralstonia solanacearum GMI1000, complete genomePUTATIVE BACTERIOPHAGE DNA-BINDING TRANSCRIPTION REGULATOR PROTEIN7e-1372.4
NC_010322:5293652:531510753151075315289183Pseudomonas putida GB-1 chromosome, complete genomephage transcriptional regulator AlpA2e-1271.2
NC_007722:2993852:299950229995022999717216Erythrobacter litoralis HTCC2594, complete genomehypothetical protein7e-1269.3
NC_002505:514732:530402530402530602201Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator2e-1167.8
NC_012668:83641:897378973789937201Vibrio cholerae MJ-1236 chromosome 1, complete sequencetranscriptional regulator2e-1167.8
NC_016944:514742:530410530410530610201Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional regulator2e-1167.8
NC_005139:796546:813042813042813236195Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator1e-1065.5
NC_012668:1688500:169464616946461694876231Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein1e-1065.1
NC_009439:1297851:130657513065751306763189Pseudomonas mendocina ymp, complete genomephage transcriptional regulator, AlpA1e-1065.1
NC_018691:3525430:356425235642523564566315Alcanivorax dieselolei B5 chromosome, complete genomePhage transcriptional regulator, AlpA2e-1064.7
NC_015379:908904:935089935089935310222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transcription factor, AlpA family2e-1064.7
NC_012880:4117376:412043941204394120642204Dickeya dadantii Ech703, complete genomephage transcriptional regulator, AlpA2e-1064.7
NC_017270:1755552:178876517887651788965201Vibrio cholerae LMA3984-4 chromosome chromosome I, completetranscriptional regulator, AlpA like protein2e-1064.3
NC_015731:1578106:159965415996541599836183Nitrosomonas sp. Is79A3 chromosome, complete genomephage transcriptional regulator AlpA3e-1063.9
NC_008322:2077628:209572820957282095949222Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA3e-1063.9
NC_009092:1441813:145459814545981454783186Shewanella loihica PV-4, complete genomephage transcriptional regulator, AlpA3e-1063.5
NC_014500:443874:459413459413459616204Dickeya dadantii 3937 chromosome, complete genomeDNA-binding protein4e-1063.5
NC_013592:4295449:430099243009924301195204Dickeya dadantii Ech586, complete genomephage transcriptional regulator, AlpA4e-1063.5
NC_012912:4194821:419819641981964198399204Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA4e-1063.5
NC_013892:1272448:129876412987641298970207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage5e-1063.2
NC_004578:3849835:386503638650363865278243Pseudomonas syringae pv. tomato str. DC3000, complete genomeDNA-binding protein, putative7e-1062.8
NC_010694:2716348:273867627386762738873198Erwinia tasmaniensis, complete genomePutative hypothetical protein (prophage CP4-57 regulatory protein)6e-1062.8
NC_009901:1516340:153082715308271531030204Shewanella pealeana ATCC 700345, complete genomephage transcriptional regulator, AlpA6e-1062.8
NC_017265:1136000:113964911396491139849201Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding protein1e-0962
NC_017168:4155143:416033541603354160535201Yersinia pestis A1122 chromosome, complete genomeAlpA family transcriptional regulator1e-0962
NC_009381:2939782:295394029539402954140201Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulator1e-0962
NC_008149:3251196:326535532653553265555201Yersinia pestis Nepal516, complete genometranscriptional regulator1e-0962
NC_010159:1417993:142247114224711422671201Yersinia pestis Angola, complete genometranscriptional regulator, AlpA family1e-0962
NC_005810:1130251:114441011444101144610201Yersinia pestis biovar Microtus str. 91001, complete genometranscriptional regulator1e-0962
NC_008150:650899:655055655055655255201Yersinia pestis Antiqua, complete genometranscriptional regulator1e-0962
NC_016631:2051475:205836320583632058578216Granulicella mallensis MP5ACTX8 chromosome, complete genomephage transcriptional regulator, AlpA2e-0961.2
NC_013892:3278647:328257832825783282784207Xenorhabdus bovienii SS-2004 chromosome, complete genomeCP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage2e-0961.2
NC_010322:768849:776374776374776583210Pseudomonas putida GB-1 chromosome, complete genomephage transcriptional regulator AlpA7e-0959.3
NC_017075:3165858:318963331896333189848216Rubrivivax gelatinosus IL144, complete genomeputative AlpA family transcriptional regulator9e-0958.9
NC_015224:3291736:331240633124063312600195Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,phage transcriptional regulator, AlpA9e-0958.9
NC_010334:4925936:493241549324154932630216Shewanella halifaxensis HAW-EB4, complete genomephage transcriptional regulator, AlpA1e-0858.2
NC_014500:3744705:376114837611483761351204Dickeya dadantii 3937 chromosome, complete genomeputative regulatory protein2e-0857.8
NC_005139:2201820:227257322725732272794222Vibrio vulnificus YJ016 chromosome I, complete sequencepredicted transcriptional regulator5e-0856.6
NC_020829:5174354:518228151822815182514234Pseudomonas denitrificans ATCC 13867, complete genomeDNA-binding protein6e-0856.2
NC_010501:4787963:479311447931144793338225Pseudomonas putida W619, complete genomephage transcriptional regulator, AlpA6e-0856.2
NC_007925:1085500:108685210868521087058207Rhodopseudomonas palustris BisB18, complete genomephage transcriptional regulator, AlpA6e-0856.2
NC_007508:2941889:295483529548352955068234Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative DNA-binding protein8e-0855.8
NC_013456:2984491:299468929946892994889201Vibrio sp. Ex25 chromosome 1, complete genomephage transcriptional regulator AlpA8e-0855.8
NC_021150:1677811:168637216863721686659288Azotobacter vinelandii CA6, complete genomeProphage CP4-57 regulatory, AlpA-like protein1e-0755.5
NC_012560:1677798:168635916863591686646288Azotobacter vinelandii DJ, complete genomeProphage CP4-57 regulatory, AlpA-like protein1e-0755.5
NC_013716:2139952:216269121626912162930240Citrobacter rodentium ICC168, complete genomehypothetical protein1e-0755.1
NC_014923:3968000:397587739758773976080204Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeProphage CP4-57 regulatory1e-0755.1
NC_008321:1993541:201135520113552011549195Shewanella sp. MR-4, complete genomephage transcriptional regulator, AlpA2e-0754.7
NC_015422:2806832:282494928249492825182234Alicycliphilus denitrificans K601 chromosome, complete genomephage transcriptional regulator AlpA2e-0754.3
NC_007969:2885249:289003828900382890298261Psychrobacter cryohalolentis K5, complete genomephage transcriptional regulator, AlpA2e-0754.3
NC_002505:1931750:193580119358011936007207Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completetranscriptional regulator2e-0754.3
NC_009457:1444449:148890414889041489110207Vibrio cholerae O395 chromosome 2, complete sequencetranscriptional regulator2e-0754.3
NC_012578:1838470:188293418829341883140207Vibrio cholerae M66-2 chromosome I, complete sequencetranscriptional regulator2e-0754.3
NC_012582:2013515:202032320203232020529207Vibrio cholerae O395 chromosome chromosome I, complete sequencetranscriptional regulator2e-0754.3
NC_012668:1688500:171150017115001711706207Vibrio cholerae MJ-1236 chromosome 1, complete sequencetranscriptional regulator2e-0754.3
NC_016944:1978058:198210919821091982315207Vibrio cholerae IEC224 chromosome I, complete sequencetranscriptional regulator2e-0754.3
NC_015675:5607297:563200956320095632224216Mesorhizobium opportunistum WSM2075 chromosome, complete genomephage transcriptional regulator AlpA2e-0754.3
NC_016445:1363831:140720214072021407378177Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completetranscriptional regulator2e-0754.3
NC_017270:1755552:177452717745271774703177Vibrio cholerae LMA3984-4 chromosome chromosome I, completetranscriptional regulator2e-0754.3
NC_007925:138927:166679166679166894216Rhodopseudomonas palustris BisB18, complete genomephage transcriptional regulator, AlpA3e-0753.9
NC_013941:3300000:333647233364723336720249Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA binding protein3e-0753.9
NC_008253:1938975:196845019684501968668219Escherichia coli 536, complete genomeputative regulatory protein3e-0753.9
NC_011745:3245000:326245132624513262654204Escherichia coli ED1a chromosome, complete genomeputative regulatory protein from prophage (AlpA family)3e-0753.9
NC_010338:359940:379731379731379931201Caulobacter sp. K31, complete genomephage transcriptional regulator, AlpA4e-0753.5
NC_015379:2417312:246348524634852463706222Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, AlpA family4e-0753.5
NC_020908:1472981:149682614968261497020195Octadecabacter arcticus 238, complete genomeprophage regulatory protein-like protein3e-0753.5
NC_017506:1100679:111453411145341114761228Marinobacter adhaerens HP15 chromosome, complete genomeprophage CP4-57 regulatory5e-0753.1
NC_013008:3525428:355770135577013557907207Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA binding protein6e-0752.8
NC_002695:3468873:349874034987403498946207Escherichia coli O157:H7 str. Sakai, complete genomeputative DNA binding protein6e-0752.8
NC_002655:3538656:356603035660303566236207Escherichia coli O157:H7 EDL933, complete genomeputative DNA binding protein6e-0752.8
NC_020304:752012:772470772470772679210Desulfocapsa sulfexigens DSM 10523, complete genomeputative transcriptional regulator6e-0752.8
NC_015554:4648919:466519546651954665377183Alteromonas sp. SN2 chromosome, complete genomephage transcriptional regulator, AlpA8e-0752.4
NC_009720:464078:485378485378485578201Xanthobacter autotrophicus Py2, complete genomephage transcriptional regulator, AlpA8e-0752.4
NC_014217:2760898:276247027624702762673204Starkeya novella DSM 506 chromosome, complete genomephage transcriptional regulator, AlpA9e-0752.4
NC_006138:432000:452649452649452921273Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-0652
NC_010688:2781624:279949727994972799718222Xanthomonas campestris pv. campestris, complete genomephage-related regulatory protein1e-0651.6
NC_007086:2477040:248606124860612486282222Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein1e-0651.6
NC_009138:1974935:198388419838841984096213Herminiimonas arsenicoxydans, complete genomeputative CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage1e-0651.6
NC_008782:1510000:151461215146121514824213Acidovorax sp. JS42, complete genomephage transcriptional regulator, AlpA1e-0651.6
NC_016832:948029:957798957798958013216Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-0651.6
NC_011745:2209288:226533522653352265553219Escherichia coli ED1a chromosome, complete genomeputative DNA binding protein from phage origin2e-0651.6
NC_013421:1819036:184891018489101849116207Pectobacterium wasabiae WPP163, complete genomephage transcriptional regulator, AlpA2e-0651.2
NC_014972:247028:265810265810266025216Desulfobulbus propionicus DSM 2032 chromosome, complete genomephage transcriptional regulator, AlpA2e-0650.8
NC_009720:251703:276787276787277002216Xanthobacter autotrophicus Py2, complete genomephage transcriptional regulator, AlpA2e-0650.8
NC_012917:1840172:185006018500601850278219Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephage transcriptional regulator, AlpA3e-0650.8
NC_009648:5119271:514087751408775141077201Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-0650.4
NC_012731:600518:627192627192627392201Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein4e-0650.4
NC_008435:1131242:116366511636651163880216Rhodopseudomonas palustris BisA53, complete genomephage transcriptional regulator, AlpA3e-0650.4
NC_017986:1862408:187337618733761873591216Pseudomonas putida ND6 chromosome, complete genomephage transcriptional regulator AlpA3e-0650.4
NC_008322:2077628:208644320864432086655213Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA3e-0650.4
NC_010170:1324758:135213513521351352347213Bordetella petrii, complete genomeputative transcriptional regulator (phage-related)3e-0650.4
NC_017033:2081206:210752221075222107743222Frateuria aurantia DSM 6220 chromosome, complete genomeputative transcriptional regulator3e-0650.4
NC_003911:2042389:205289020528902053081192Silicibacter pomeroyi DSS-3, complete genomeDNA-binding protein, putative4e-0650.1
NC_010634:1916000:191718019171801917365186Yersinia pseudotuberculosis PB1/+, complete genomephage transcriptional regulator, AlpA4e-0650.1
NC_009381:1362471:139729913972991397484186Yersinia pestis Pestoides F chromosome, complete genometranscriptional regulator4e-0650.1
NC_012731:3411161:342822134282213428406186Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative transcriptional regulator4e-0650.1
NC_010473:2839902:284843128484312848643213Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; DNA-binding transcriptional activator4e-0650.1
NC_000913:2746886:275666627566662756878213Escherichia coli K12, complete genomeCP4-57 prophage; DNA-binding transcriptional activator4e-0650.1
AC_000091:2747520:275730027573002757512213Escherichia coli W3110 DNA, complete genomeDNA-binding transcriptional activator4e-0650.1
NC_012759:2633949:264247826424782642690213Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; DNA-binding transcriptional activator4e-0650.1
NC_011094:638552:652744652744652941198Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-0650.1
NC_003143:2137945:213871521387152138996282Yersinia pestis CO92, complete genomeputative transcriptional regulator6e-0649.7
NC_008150:1420825:142179414217941422075282Yersinia pestis Antiqua, complete genomehypothetical protein6e-0649.7
NC_005810:1794490:179545917954591795740282Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulator6e-0649.7
NC_015675:4565500:457963945796394579836198Mesorhizobium opportunistum WSM2075 chromosome, complete genomephage transcriptional regulator AlpA6e-0649.7
NC_011094:2791719:281336128133612813570210Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-0649.7
NC_009792:3225965:324232932423293242529201Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein7e-0649.3
NC_020064:3609844:362729036272903627496207Serratia marcescens FGI94, complete genomeputative transcriptional regulator8e-0649.3