Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3849835 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
384983538518592025terminase large subunitQuickGO ontologyBLASTP
38518643852433570hypothetical proteinBLASTP
38526583852804147hypothetical protein
38528063853192387hypothetical proteinBLASTP
38531893853512324holinQuickGO ontologyBLASTP
38540403854399360hypothetical proteinBLASTP
385439238566112220DNA primase domain proteinQuickGO ontologyBLASTP
38566013856828228C4-type zinc finger protein DksATraR familyQuickGO ontologyBLASTP
38568213857420600hypothetical proteinBLASTP
38579903858721732repressor protein c2QuickGO ontologyBLASTP
38599293860504576hypothetical proteinBLASTP
38605133860797285hypothetical proteinBLASTP
38609383861312375hypothetical protein
38613093861632324transcriptional regulator putativeQuickGO ontologyBLASTP
38616833862105423hypothetical proteinBLASTP
386280038645841785C-5 cytosine-specific DNA methylase family proteinQuickGO ontologyBLASTP
38645813865039459hypothetical proteinBLASTP
38650363865278243DNA-binding protein putativeQuickGO ontologyBLASTP
386535438657103576-pyruvoyl tetrahydrobiopterin synthase putativeQuickGO ontologyBLASTP
38668843867693810transposaseIS proteinQuickGO ontologyBLASTP
386769038687121023ISPsy4 transposaseQuickGO ontologyBLASTP